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Plasmid Files

ZsGreen1

Zoanthus green fluorescent protein.

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ZsGreen1.dna
Map and Sequence File:    Download    Open   
Sequence Author:  Clontech (TaKaRa)
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600 400 200 ZsGreen1 End (696) BsiHKAI (665) BtgZI (654) BsrGI - TatI (551) AcuI - Eco57MI (532) BfuAI - BspMI (512) BmgBI (492) BanII (440) BssS α I (364) BseRI (361) HaeII - PluTI (308) SfoI (306) NarI (305) KasI (304) BsrBI (284) NaeI (267) NgoMIV (265) HincII (240) AccI (239) SalI (238) PflFI - Tth111I (235) NmeAIII (194) AhdI (180) SgrAI (88) BclI * (83) StyI (26) Start (0) ZsGreen1 696 bp
End  (696)
0 sites
BsiHKAI  (665)
1 site
G W G C W C C W C G W G

Sticky ends from different BsiHKAI sites may not be compatible.
BtgZI  (654)
1 site
G C G A T G ( N ) 10 C G C T A C ( N ) 10 ( N ) 4

Sticky ends from different BtgZI sites may not be compatible.
After cleavage, BtgZI can remain bound to DNA and alter its electrophoretic mobility.
BtgZI is typically used at 60°C, but is 75% active at 37°C.
BsrGI  (551)
1 site
T G T A C A A C A T G T

BsrGI is typically used at 37°C, but is even more active at 60°C.
TatI  (551)
1 site
W G T A C W W C A T G W
AcuI  (532)
1 site
C T G A A G ( N ) 14 N N G A C T T C ( N ) 14

Efficient cleavage requires at least two copies of the AcuI recognition sequence.
Sticky ends from different AcuI sites may not be compatible.
After cleavage, AcuI can remain bound to DNA and alter its electrophoretic mobility.
For full activity, add fresh S-adenosylmethionine (SAM).
Eco57MI  (532)
1 site
C T G R A G ( N ) 14 N N G A C Y T C ( N ) 14

Sticky ends from different Eco57MI sites may not be compatible.
After cleavage, Eco57MI can remain bound to DNA and alter its electrophoretic mobility.
For full activity, add fresh S-adenosylmethionine (SAM).
BfuAI  (512)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BfuAI recognition sequence.
Sticky ends from different BfuAI sites may not be compatible.
BfuAI is typically used at 50°C, but is 50% active at 37°C.
BspMI  (512)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BspMI recognition sequence.
Sticky ends from different BspMI sites may not be compatible.
BmgBI  (492)
1 site
C A C G T C G T G C A G

This recognition sequence is asymmetric, so ligating blunt ends generated by BmgBI will not always regenerate a BmgBI site.
BanII  (440)
1 site
G R G C Y C C Y C G R G

Sticky ends from different BanII sites may not be compatible.
BssSαI  (364)
1 site
C A C G A G G T G C T C
BseRI  (361)
1 site
G A G G A G ( N ) 8 N N C T C C T C ( N ) 8

Sticky ends from different BseRI sites may not be compatible.
BseRI quickly loses activity at 37°C.
Prolonged incubation with BseRI may lead to degradation of the DNA.
HaeII  (308)
1 site
R G C G C Y Y C G C G R
PluTI  (308)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the PluTI recognition sequence.
SfoI  (306)
1 site
G G C G C C C C G C G G
NarI  (305)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the NarI recognition sequence.
KasI  (304)
1 site
G G C G C C C C G C G G
BsrBI  (284)
1 site
C C G C T C G G C G A G

This recognition sequence is asymmetric, so ligating blunt ends generated by BsrBI will not always regenerate a BsrBI site.
BsrBI is typically used at 37°C, but can be used at temperatures up to 50°C.
NaeI  (267)
1 site
G C C G G C C G G C C G

Efficient cleavage requires at least two copies of the NaeI recognition sequence.
NgoMIV  (265)
1 site
G C C G G C C G G C C G

Efficient cleavage requires at least two copies of the NgoMIV recognition sequence.
HincII  (240)
1 site
G T Y R A C C A R Y T G
AccI  (239)
1 site
G T M K A C C A K M T G

Efficient cleavage with AccI requires ≥13 bp on each side of the recognition sequence.
Sticky ends from different AccI sites may not be compatible.
SalI  (238)
1 site
G T C G A C C A G C T G
PflFI  (235)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (235)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
NmeAIII  (194)
1 site
G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19

Efficient cleavage requires at least two copies of the NmeAIII recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
AhdI  (180)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
SgrAI  (88)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
BclI  (83)
1 site
T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
StyI  (26)
1 site
C C W W G G G G W W C C

Sticky ends from different StyI sites may not be compatible.
Start  (0)
0 sites
ZsGreen1
1 .. 696  =  696 bp
231 amino acids  =  26.1 kDa
Product: Zoanthus green fluorescent protein
mammalian codon-optimized
ZsGreen1
1 .. 696  =  696 bp
231 amino acids  =  26.1 kDa
Product: Zoanthus green fluorescent protein
mammalian codon-optimized
ORF:  1 .. 696  =  696 bp
ORF:  231 amino acids  =  26.1 kDa
ORF:  3 .. 695  =  693 bp
ORF:  231 amino acids  =  26.8 kDa  (no start codon)
ORF:  1 .. 696  =  696 bp
ORF:  232 amino acids  =  22.5 kDa  (no start codon)
ORF:  378 .. 695  =  318 bp
ORF:  105 amino acids  =  11.7 kDa  (no start codon)
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