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pMCSG8 (linearized)

Linearized bacterial vector for ligation-independent cloning (LIC), with a 6xHis-S-loop-TEV leader.

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pMCSG8 (linearized).dna
Map and Sequence File:    Download    Open   
Sequence Author:  Midwest Center for Structural Genomics
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StyI (5178) ScaI (4426) PvuI (4316) PstI (4191) BsaI (4007) AhdI (3946) AlwNI (3469) PciI (3053) BspQI - SapI (2937) BstZ17I (2824) BsaAI (2805) PflFI - Tth111I (2798) BlpI (5201) AvaI - BsoBI - PaeR7I - PspXI - XhoI (5279) BmeT110I (5280) EagI - NotI (5287) HindIII (5294) SalI (5300) Eco53kI (5309) SacI (5311) EcoRI (5313) BamHI (5319) End (5325) Start (0) Acc65I (25) KpnI (29) AgeI (43) BglII (86) NdeI (122) XbaI (160) BspDI * - ClaI * (229) SgrAI (271) SphI (427) EcoNI (487) PflMI (534) BstAPI (635) MluI (952) BclI * (966) BstEII (1133) PspOMI (1159) ApaI (1163) BssHII (1363) EcoRV (1402) HpaI (1458) PshAI (1797) FspAI (2034) PpuMI (2059) Bpu10I (2159) pMCSG8 5325 bp
StyI  (5178)
1 site
C C W W G G G G W W C C

Sticky ends from different StyI sites may not be compatible.
ScaI  (4426)
1 site
A G T A C T T C A T G A
PvuI  (4316)
1 site
C G A T C G G C T A G C
PstI  (4191)
1 site
C T G C A G G A C G T C
BsaI  (4007)
1 site
G G T C T C N C C A G A G N ( N ) 4

Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
AhdI  (3946)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
AlwNI  (3469)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
PciI  (3053)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
BspQI  (2937)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different BspQI sites may not be compatible.
SapI  (2937)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
BstZ17I  (2824)
1 site
G T A T A C C A T A T G
BsaAI  (2805)
1 site
Y A C G T R R T G C A Y
PflFI  (2798)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (2798)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
BlpI  (5201)
1 site
G C T N A G C C G A N T C G

Sticky ends from different BlpI sites may not be compatible.
AvaI  (5279)
1 site
C Y C G R G G R G C Y C

Sticky ends from different AvaI sites may not be compatible.
BsoBI  (5279)
1 site
C Y C G R G G R G C Y C

Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
PaeR7I  (5279)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (5279)
1 site
V C T C G A G B B G A G C T C V
XhoI  (5279)
1 site
C T C G A G G A G C T C
BmeT110I  (5280)
1 site
C Y C G R G G R G C Y C
EagI  (5287)
1 site
C G G C C G G C C G G C
NotI  (5287)
1 site
G C G G C C G C C G C C G G C G
HindIII  (5294)
1 site
A A G C T T T T C G A A
SalI  (5300)
1 site
G T C G A C C A G C T G
Eco53kI  (5309)
1 site
G A G C T C C T C G A G
SacI  (5311)
1 site
G A G C T C C T C G A G
EcoRI  (5313)
1 site
G A A T T C C T T A A G
BamHI  (5319)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF™ (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
End  (5325)
0 sites
Start  (0)
0 sites
Acc65I  (25)
1 site
G G T A C C C C A T G G
KpnI  (29)
1 site
G G T A C C C C A T G G
AgeI  (43)
1 site
A C C G G T T G G C C A
BglII  (86)
1 site
A G A T C T T C T A G A
NdeI  (122)
1 site
C A T A T G G T A T A C

Prolonged incubation with NdeI may lead to removal of additional nucleotides.
XbaI  (160)
1 site
T C T A G A A G A T C T
BspDI  (229)
1 site
A T C G A T T A G C T A
* Blocked by Dam methylation.
ClaI  (229)
1 site
A T C G A T T A G C T A
* Blocked by Dam methylation.
SgrAI  (271)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
SphI  (427)
1 site
G C A T G C C G T A C G
EcoNI  (487)
1 site
C C T N N N N N A G G G G A N N N N N T C C

The 1-base overhangs produced by EcoNI may be hard to ligate.
Sticky ends from different EcoNI sites may not be compatible.
PflMI  (534)
1 site
C C A N N N N N T G G G G T N N N N N A C C

Sticky ends from different PflMI sites may not be compatible.
BstAPI  (635)
1 site
G C A N N N N N T G C C G T N N N N N A C G

Sticky ends from different BstAPI sites may not be compatible.
MluI  (952)
1 site
A C G C G T T G C G C A
BclI  (966)
1 site
T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
BstEII  (1133)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
PspOMI  (1159)
1 site
G G G C C C C C C G G G
ApaI  (1163)
1 site
G G G C C C C C C G G G

ApaI can be used between 25°C and 37°C.
BssHII  (1363)
1 site
G C G C G C C G C G C G

BssHII is typically used at 50°C, but is 75% active at 37°C.
EcoRV  (1402)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
HpaI  (1458)
1 site
G T T A A C C A A T T G
PshAI  (1797)
1 site
G A C N N N N G T C C T G N N N N C A G

PshAI quickly loses activity at 37°C, but can be used at 25°C for long incubations.
FspAI  (2034)
1 site
R T G C G C A Y Y A C G C G T R
PpuMI  (2059)
1 site
R G G W C C Y Y C C W G G R

Sticky ends from different PpuMI sites may not be compatible.
Bpu10I  (2159)
1 site
C C T