pRetroX-PTuner

Retroviral vector for fusing a destabilization domain to the N-terminus of a partner protein.

Sequence Author: Clontech (TaKaRa)

|Download SnapGene Viewer
No matches
NdeI (6006) SspI (5639) ScaI (5315) BspQI - SapI (3826) AgeI - SgrAI (2933) AscI (446) SpeI (729) PshAI (851) PstI (1014) MluI (1068) BtgZI (1138) EF-1α intron A BsgI (1395) NotI (1695) BglII (1702) BspDI - ClaI (1709) BamHI (1714) NcoI (1722) AvrII (1881) PflMI (2183) BmgBI (2273) BsiWI (2392) SalI (2444) AccI (2445) HincII (2446) RsrII (2452) BstEII (2470) StuI (2667) CsiI - SexAI * (2903) pRetroX-PTuner 6229 bp
NdeI  (6006)
1 site
C A T A T G G T A T A C

Prolonged incubation with NdeI may lead to removal of additional nucleotides.
SspI  (5639)
1 site
A A T A T T T T A T A A
ScaI  (5315)
1 site
A G T A C T T C A T G A
BspQI  (3826)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different BspQI sites may not be compatible.
SapI  (3826)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
AgeI  (2933)
1 site
A C C G G T T G G C C A
SgrAI  (2933)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
AscI  (446)
1 site
G G C G C G C C C C G C G C G G
SpeI  (729)
1 site
A C T A G T T G A T C A
PshAI  (851)
1 site
G A C N N N N G T C C T G N N N N C A G

PshAI quickly loses activity at 37°C, but can be used at 25°C for long incubations.
PstI  (1014)
1 site
C T G C A G G A C G T C
MluI  (1068)
1 site
A C G C G T T G C G C A
BtgZI  (1138)
1 site
G C G A T G ( N ) 10 C G C T A C ( N ) 10 ( N ) 4

Sticky ends from different BtgZI sites may not be compatible.
After cleavage, BtgZI can remain bound to DNA and alter its electrophoretic mobility.
BtgZI is typically used at 60°C, but is 75% active at 37°C.
BsgI  (1395)
1 site
G T G C A G ( N ) 14 N N C A C G T C ( N ) 14

Efficient cleavage requires at least two copies of the BsgI recognition sequence.
Sticky ends from different BsgI sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
NotI  (1695)
1 site
G C G G C C G C C G C C G G C G
BglII  (1702)
1 site
A G A T C T T C T A G A
BspDI  (1709)
1 site
A T C G A T T A G C T A
ClaI  (1709)
1 site
A T C G A T T A G C T A
BamHI  (1714)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
NcoI  (1722)
1 site
C C A T G G G G T A C C
AvrII  (1881)
1 site
C C T A G G G G A T C C
PflMI  (2183)
1 site
C C A N N N N N T G G G G T N N N N N A C C

Sticky ends from different PflMI sites may not be compatible.
BmgBI  (2273)
1 site
C A C G T C G T G C A G

This recognition sequence is asymmetric, so ligating blunt ends generated by BmgBI will not always regenerate a BmgBI site.
BsiWI  (2392)
1 site
C G T A C G G C A T G C

BsiWI is typically used at 55°C, but is 50% active at 37°C.
SalI  (2444)
1 site
G T C G A C C A G C T G
AccI  (2445)
1 site
G T M K A C C A K M T G

Efficient cleavage with AccI requires ≥13 bp on each side of the recognition sequence.
Sticky ends from different AccI sites may not be compatible.
HincII  (2446)
1 site
G T Y R A C C A R Y T G
RsrII  (2452)
1 site
C G G W C C G G C C W G G C

Efficient cleavage requires at least two copies of the RsrII recognition sequence.
Sticky ends from different RsrII sites may not be compatible.
For full activity, add fresh DTT.
BstEII  (2470)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
StuI  (2667)
1 site
A G G C C T T C C G G A
CsiI  (2903)
1 site
A C C W G G T T G G W C C A

Sticky ends from different CsiI sites may not be compatible.
SexAI  (2903)
1 site
A C C W G G T T G G W C C A
* Blocked by Dcm methylation.
Sticky ends from different SexAI sites may not be compatible.
AmpR
4762 .. 5622  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   4762 .. 5553  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4762 .. 5622  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   5554 .. 5622  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4762 .. 5622  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
PuroR
2336 .. 2932  =  597 bp
199 amino acids  =  21.5 kDa
Product: puromycin N-acetyltransferase
confers resistance to puromycin
PuroR
2336 .. 2932  =  597 bp
199 amino acids  =  21.5 kDa
Product: puromycin N-acetyltransferase
confers resistance to puromycin
LTR
2992 .. 3585  =  594 bp
long terminal repeat from Moloney murine leukemia virus
LTR
2992 .. 3585  =  594 bp
long terminal repeat from Moloney murine leukemia virus
LTR
1 .. 592  =  592 bp
long terminal repeat from Moloney murine leukemia virus
LTR
1 .. 592  =  592 bp
long terminal repeat from Moloney murine leukemia virus
ori
4003 .. 4591  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
4003 .. 4591  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
IRES
1730 .. 2303  =  574 bp
internal ribosome entry site (IRES) of the encephalomyocarditis virus (EMCV)
IRES
1730 .. 2303  =  574 bp
internal ribosome entry site (IRES) of the encephalomyocarditis virus (EMCV)
MMLV Ψ
655 .. 1012  =  358 bp
packaging signal of Moloney murine leukemia virus (MMLV)
MMLV Ψ
655 .. 1012  =  358 bp
packaging signal of Moloney murine leukemia virus (MMLV)
DD
1368 .. 1691  =  324 bp
108 amino acids  =  11.9 kDa
2 segments
   Segment 1:  
   1368 .. 1370  =  3 bp
   1 amino acid  =  149.2 Da
Product: destabilization domain that can be stabilized by Shield1 in the ProteoTuner™ system
L106P mutant of FKBP12
DD
1368 .. 1691  =  324 bp
108 amino acids  =  11.9 kDa
2 segments
   Segment 2:  
   1371 .. 1691  =  321 bp
   107 amino acids  =  11.8 kDa
Product: destabilization domain that can be stabilized by Shield1 in the ProteoTuner™ system
L106P mutant of FKBP12
DD
1368 .. 1691  =  324 bp
108 amino acids  =  11.9 kDa
2 segments
Product: destabilization domain that can be stabilized by Shield1 in the ProteoTuner™ system
L106P mutant of FKBP12
EF-1α intron A
1075 .. 1278  =  204 bp
truncated intron upstream of the start codon of human EF-1α
EF-1α intron A
1075 .. 1278  =  204 bp
truncated intron upstream of the start codon of human EF-1α
EF-1α exon
1279 .. 1308  =  30 bp
truncated exon 2 from human EF-1α, beginning with a GT-to-CC mutation that reduces splicing efficiency
EF-1α exon
1279 .. 1308  =  30 bp
truncated exon 2 from human EF-1α, beginning with a GT-to-CC mutation that reduces splicing efficiency
AmpR promoter
5623 .. 5727  =  105 bp
AmpR promoter
5623 .. 5727  =  105 bp
MCS
1694 .. 1727  =  34 bp
multiple cloning site
MCS
1694 .. 1727  =  34 bp
multiple cloning site
ORF:  2213 .. 2959  =  747 bp
ORF:  248 amino acids  =  27.0 kDa
ORF:  4892 .. 5158  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  6008 .. 3  =  225 bp
ORF:  74 amino acids  =  8.7 kDa
ORF:  1368 .. 1781  =  414 bp
ORF:  137 amino acids  =  15.4 kDa
ORF:  734 .. 1018  =  285 bp
ORF:  94 amino acids  =  9.8 kDa
ORF:  4762 .. 5622  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
Click here to try SnapGene

Download pRetroX-PTuner.dna file

SnapGene

SnapGene is the easiest way to plan, visualize and document your everyday molecular biology procedures

  • Fast accurate construct design for all major molecular cloning techniques
  • Validate sequenced constructs using powerful alignment tools
  • Customize plasmid maps with flexible annotation and visualization controls
  • Automatically generate a rich graphical history of every edit and procedure

SnapGene Viewer

SnapGene Viewer is free software that allows molecular biologists to create, browse, and share richly annotated sequence files.

  • Gain unparalleled visibility of your plasmids, DNA and protein sequences
  • Annotate features on your plasmids using the curated feature database
  • Store, search, and share your sequences, files and maps

Individual Sequences & Maps

The maps, notes, and annotations in the zip file on this page are copyrighted material. This material may be used without restriction by academic, nonprofit, and governmental entities, except that the source must be cited as ’’www.snapgene.com/resources’’. Commercial entities must contact GSL Biotech LLC for permission and terms of use.

Discover the most user-friendly molecular biology experience.