pHIL-D2

Pichia pastoris HIS4 vector for methanol-inducible intracellular expression of a protein.

Sequence Author: Thermo Fisher (Invitrogen)

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PflFI - Tth111I (8055) BstZ17I (8030) NdeI (7978) BspQI - SapI (7916) AflIII - PciI (7799) PsiI (6685) SwaI (6588) PstI (6232) PvuI (6105) ScaI (5993) AatII (5555) ZraI (5553) SphI (4493) SgrAI (4337) BfuAI - BspMI (4193) AleI (88) Eco53kI (218) SacI (220) PmeI (423) BlpI (598) NsiI (688) XcmI (718) EcoRI (956) AgeI (1010) FspAI (1536) XbaI (1742) Bsu36I (1798) HpaI (1848) SalI (2887) StuI (2972) NcoI (3342) BspEI (3554) BsrGI (4008) pHIL-D2 8210 bp
PflFI  (8055)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (8055)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
BstZ17I  (8030)
1 site
G T A T A C C A T A T G
NdeI  (7978)
1 site
C A T A T G G T A T A C

Prolonged incubation with NdeI may lead to removal of additional nucleotides.
BspQI  (7916)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different BspQI sites may not be compatible.
SapI  (7916)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
AflIII  (7799)
1 site
A C R Y G T T G Y R C A

Sticky ends from different AflIII sites may not be compatible.
PciI  (7799)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
PsiI  (6685)
1 site
T T A T A A A A T A T T
SwaI  (6588)
1 site
A T T T A A A T T A A A T T T A

SwaI is typically used at 25°C, but is 50% active at 37°C.
PstI  (6232)
1 site
C T G C A G G A C G T C
PvuI  (6105)
1 site
C G A T C G G C T A G C
ScaI  (5993)
1 site
A G T A C T T C A T G A
AatII  (5555)
1 site
G A C G T C C T G C A G
ZraI  (5553)
1 site
G A C G T C C T G C A G
SphI  (4493)
1 site
G C A T G C C G T A C G
SgrAI  (4337)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
BfuAI  (4193)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BfuAI recognition sequence.
Sticky ends from different BfuAI sites may not be compatible.
BfuAI is typically used at 50°C, but is 50% active at 37°C.
BspMI  (4193)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BspMI recognition sequence.
Sticky ends from different BspMI sites may not be compatible.
AleI  (88)
1 site
C A C N N N N G T G G T G N N N N C A C
Eco53kI  (218)
1 site
G A G C T C C T C G A G
SacI  (220)
1 site
G A G C T C C T C G A G
PmeI  (423)
1 site
G T T T A A A C C A A A T T T G
BlpI  (598)
1 site
G C T N A G C C G A N T C G

Sticky ends from different BlpI sites may not be compatible.
NsiI  (688)
1 site
A T G C A T T A C G T A
XcmI  (718)
1 site
C C A N N N N N N N N N T G G G G T N N N N N N N N N A C C

The 1-base overhangs produced by XcmI may be hard to ligate.
Sticky ends from different XcmI sites may not be compatible.
EcoRI  (956)
1 site
G A A T T C C T T A A G
AgeI  (1010)
1 site
A C C G G T T G G C C A
FspAI  (1536)
1 site
R T G C G C A Y Y A C G C G T R
XbaI  (1742)
1 site
T C T A G A A G A T C T
Bsu36I  (1798)
1 site
C C T N A G G G G A N T C C

Sticky ends from different Bsu36I sites may not be compatible.
HpaI  (1848)
1 site
G T T A A C C A A T T G
SalI  (2887)
1 site
G T C G A C C A G C T G
StuI  (2972)
1 site
A G G C C T T C C G G A
NcoI  (3342)
1 site
C C A T G G G G T A C C
BspEI  (3554)
1 site
T C C G G A A G G C C T
BsrGI  (4008)
1 site
T G T A C A A C A T G T

BsrGI is typically used at 37°C, but is even more active at 60°C.
PpHIS4
1690 .. 4224  =  2535 bp
844 amino acids  =  92.2 kDa
Product: multifunctional enzyme, required for histidine biosynthesis
auxotrophic marker for Pichia pastoris
PpHIS4
1690 .. 4224  =  2535 bp
844 amino acids  =  92.2 kDa
Product: multifunctional enzyme, required for histidine biosynthesis
auxotrophic marker for Pichia pastoris
AOX1 promoter
14 .. 953  =  940 bp
inducible promoter, regulated by methanol
AOX1 promoter
14 .. 953  =  940 bp
inducible promoter, regulated by methanol
AmpR
5687 .. 6547  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
   Segment 1:  signal sequence  
   5687 .. 5755  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
5687 .. 6547  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
   Segment 2:  
   5756 .. 6547  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
5687 .. 6547  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AOX1 3' fragment
4579 .. 5335  =  757 bp
region downstream of Pichia pastoris AOX1 gene
AOX1 3' fragment
4579 .. 5335  =  757 bp
region downstream of Pichia pastoris AOX1 gene
ori
7155 .. 7743  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
7155 .. 7743  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
f1 ori
6589 .. 7044  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
6589 .. 7044  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
AOX1 terminator
1031 .. 1277  =  247 bp
transcription terminator for AOX1
AOX1 terminator
1031 .. 1277  =  247 bp
transcription terminator for AOX1
AmpR promoter
5582 .. 5686  =  105 bp
AmpR promoter
5582 .. 5686  =  105 bp
ORF:  1360 .. 1665  =  306 bp
ORF:  101 amino acids  =  10.8 kDa
ORF:  4418 .. 4855  =  438 bp
ORF:  145 amino acids  =  15.4 kDa
ORF:  5687 .. 6547  =  861 bp
ORF:  286 amino acids  =  31.5 kDa
ORF:  477 .. 752  =  276 bp
ORF:  91 amino acids  =  10.6 kDa
ORF:  4178 .. 4492  =  315 bp
ORF:  104 amino acids  =  11.0 kDa
ORF:  1690 .. 4224  =  2535 bp
ORF:  844 amino acids  =  92.2 kDa
ORF:  4366 .. 5088  =  723 bp
ORF:  240 amino acids  =  26.3 kDa
ORF:  6151 .. 6417  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
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