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Plasmid Files

pAmCyan1-N1

Vector for fusing AmCyan1 to the C-terminus of a partner protein.

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pAmCyan1-N1.dna
Map and Sequence File:    Download    Open   
Sequence Author:  Clontech (TaKaRa)
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AflIII - PciI (4645) ApaLI (4331) BsaI (3716) PfoI (3502) RsrII (3243) BsrDI (2960) PflFI - Tth111I (2845) FspI (2829) PluTI (2730) SfoI (2728) NarI (2727) KasI (2726) BspDI * - ClaI * (2567) BseRI (2545) SfiI (2502) AseI (7) NdeI (234) SnaBI (340) NheI (591) BmtI (595) AfeI (596) BglII (609) PaeR7I - XhoI (613) Eco53kI (618) SacI (620) HindIII (622) EcoRI (629) SalI (639) AccI (640) Acc65I (645) KpnI (649) SacII (652) PspOMI (653) TspMI - XmaI (656) ApaI (657) SmaI (658) BamHI (660) AgeI (666) BstEII (819) BbsI (1105) KflI - PpuMI (1113) BmgBI (1164) BstXI - PmlI (1263) EcoNI (1297) BsgI (1336) AleI (1351) NotI (1371) XbaI * (1381) MfeI (1477) HpaI (1490) Bts α I (1566) AflII (1609) SexAI * (2316) pAmCyan1-N1 4703 bp
AflIII  (4645)
1 site
A C R Y G T T G Y R C A

Sticky ends from different AflIII sites may not be compatible.
PciI  (4645)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
ApaLI  (4331)
1 site
G T G C A C C A C G T G
BsaI  (3716)
1 site
G G T C T C N C C A G A G N ( N ) 4

Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
PfoI  (3502)
1 site
T C C N G G A A G G N C C T

Sticky ends from different PfoI sites may not be compatible.
RsrII  (3243)
1 site
C G G W C C G G C C W G G C

Efficient cleavage requires at least two copies of the RsrII recognition sequence.
Sticky ends from different RsrII sites may not be compatible.
For full activity, add fresh DTT.
BsrDI  (2960)
1 site
G C A A T G N N C G T T A C

Sticky ends from different BsrDI sites may not be compatible.
PflFI  (2845)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (2845)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
FspI  (2829)
1 site
T G C G C A A C G C G T
PluTI  (2730)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the PluTI recognition sequence.
SfoI  (2728)
1 site
G G C G C C C C G C G G
NarI  (2727)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the NarI recognition sequence.
KasI  (2726)
1 site
G G C G C C C C G C G G
BspDI  (2567)
1 site
A T C G A T T A G C T A
* Blocked by Dam methylation.
ClaI  (2567)
1 site
A T C G A T T A G C T A
* Blocked by Dam methylation.
BseRI  (2545)
1 site
G A G G A G ( N ) 8 N N C T C C T C ( N ) 8

Sticky ends from different BseRI sites may not be compatible.
BseRI quickly loses activity at 37°C.
Prolonged incubation with BseRI may lead to degradation of the DNA.
SfiI  (2502)
1 site
G G C C N N N N N G G C C C C G G N N N N N C C G G

Efficient cleavage requires at least two copies of the SfiI recognition sequence.
Sticky ends from different SfiI sites may not be compatible.
AseI  (7)
1 site
A T T A A T T A A T T A
NdeI  (234)
1 site
C A T A T G G T A T A C

Prolonged incubation with NdeI may lead to removal of additional nucleotides.
SnaBI  (340)
1 site
T A C G T A A T G C A T
NheI  (591)
1 site