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pDsRed-Express2-1

Promoterless reporter vector encoding rapidly maturing and noncytotoxic DsRed-Express2.

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pDsRed-Express2-1.dna
Map and Sequence File:    Download    Open   
Sequence Author:  Clontech (TaKaRa)
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AfeI (14) AflIII - PciI (4049) EcoO109I (3229) BsaI (3120) PfoI (2906) RsrII (2647) BsrDI (2364) PflFI - Tth111I (2249) FspI (2233) PluTI (2134) SfoI (2132) NarI (2131) KasI (2130) BglII (27) PaeR7I - XhoI (31) Eco53kI (36) SacI (38) HindIII (40) EcoRI (47) SalI (57) AccI (58) Acc65I (63) KpnI (67) SacII (70) PspOMI (71) TspMI - XmaI (74) ApaI (75) SmaI (76) BamHI (78) AgeI (84) AarI (225) AhdI (276) SbfI (437) PmlI (459) BbsI (517) PflMI * (615) AleI (724) BssHII (741) NotI (775) XbaI * (785) MfeI (881) HpaI (894) Bts α I (970) AflII (1013) DraIII (1247) BglI - SfiI (1906) StuI (1952) BspDI * - ClaI * (1971) pDsRed-Express2-1 4107 bp
AfeI  (14)
1 site
A G C G C T T C G C G A
AflIII  (4049)
1 site
A C R Y G T T G Y R C A

Sticky ends from different AflIII sites may not be compatible.
PciI  (4049)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
EcoO109I  (3229)
1 site
R G G N C C Y Y C C N G G R

Sticky ends from different EcoO109I sites may not be compatible.
BsaI  (3120)
1 site
G G T C T C N C C A G A G N ( N ) 4

Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
PfoI  (2906)
1 site
T C C N G G A A G G N C C T

Sticky ends from different PfoI sites may not be compatible.
RsrII  (2647)
1 site
C G G W C C G G C C W G G C

Efficient cleavage requires at least two copies of the RsrII recognition sequence.
Sticky ends from different RsrII sites may not be compatible.
For full activity, add fresh DTT.
BsrDI  (2364)
1 site
G C A A T G N N C G T T A C

Sticky ends from different BsrDI sites may not be compatible.
PflFI  (2249)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (2249)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
FspI  (2233)
1 site
T G C G C A A C G C G T
PluTI  (2134)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the PluTI recognition sequence.
SfoI  (2132)
1 site
G G C G C C C C G C G G
NarI  (2131)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the NarI recognition sequence.
KasI  (2130)
1 site
G G C G C C C C G C G G
BglII  (27)
1 site
A G A T C T T C T A G A
PaeR7I  (31)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
XhoI  (31)
1 site
C T C G A G G A G C T C
Eco53kI  (36)
1 site
G A G C T C C T C G A G
SacI  (38)
1 site
G A G C T C C T C G A G
HindIII  (40)
1 site
A A G C T T T T C G A A
EcoRI  (47)
1 site
G A A T T C C T T A A G
SalI  (57)
1 site
G T C G A C C A G C T G
AccI  (58)
1 site
G T M K A C C A K M T G

Efficient cleavage with AccI requires ≥13 bp on each side of the recognition sequence.
Sticky ends from different AccI sites may not be compatible.
Acc65I  (63)
1 site
G G T A C C C C A T G G
KpnI  (67)
1 site
G G T A C C C C A T G G
SacII  (70)
1 site
C C G C G G G G C G C C

Efficient cleavage requires at least two copies of the SacII recognition sequence.
PspOMI  (71)
1 site
G G G C C C C C C G G G
TspMI  (74)
1 site
C C C G G G G G G C C C
XmaI  (74)
1 site
C C C G G G G G G C C C

Efficient cleavage requires at least two copies of the XmaI recognition sequence.
Full cleavage with XmaI may require a long incubation.
ApaI  (75)
1 site
G G G C C C C C C G G G

ApaI can be used between 25°C and 37°C.
SmaI  (76)
1 site
C C C G G G G G G C C C

SmaI can be used at 37°C for brief incubations.
BamHI  (78)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF™ (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
AgeI  (84)
1 site
A C C G G T T G G C C A
AarI  (225)
1 site
C A C C T G C ( N ) 4 G T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the AarI recognition sequence.
Sticky ends from different AarI sites may not be compatible.
After cleavage, AarI can remain bound to DNA and alter its electrophoretic mobility.
AhdI  (276)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
SbfI  (437)
1 site
C C T G C A G G G G A C G T C C
PmlI  (459)
1 site
C A C G T G G T G C A C

PmlI gradually loses activity when stored at -20°C.
BbsI  (517)
1 site
G A A G A C N N C T T C T G N N ( N ) 4

Sticky ends from different BbsI sites may not be compatible.
BbsI gradually loses activity when stored at -20°C.
PflMI  (615)
1 site
C C A N N N N N T G G G G T N N N N N A C C
* Blocked by Dcm methylation.
Sticky ends from different PflMI sites may not be compatible.
AleI  (724)
1 site
C A C N N N N G T G G T G N N N N C A C
BssHII  (741)
1 site
G C G C G C C G C G C G

BssHII is typically used at 50°C, but is 75% active at 37°C.
NotI  (775)
1 site
G C G G C C G C C G C C G G C G
XbaI  (785)
1 site
T C T A G A A G A T C T
* Blocked by Dam methylation.
MfeI  (881)
1 site
C A A T T G G T T A A C
HpaI  (894)
1 site
G T T A A C C A A T T G
BtsαI  (970)
1 site
G C A G T G N N C G T C A C

Sticky ends from different BtsαI sites may not be compatible.
AflII  (1013)
1 site
C T T A A G G A A T T C
DraIII  (1247)
1 site
C A C N N N G T G G T G N N N C A C

Sticky ends from different DraIII sites may not be compatible.
BglI  (1906)
1 site
G C C N N N N N G G C C G G N N N N N C C G

Sticky ends from different BglI sites may not be compatible.
SfiI  (1906)
1 site
G G C C N N N N N G G C C C C G G N N N N N C C G G

Efficient cleavage requires at least two copies of the SfiI recognition sequence.
Sticky ends from different SfiI sites may not be compatible.
StuI  (1952)
1 site
A G G C C T T C C G G A
BspDI  (1971)
1 site
A T C G A T T A G C T A
* Blocked by Dam methylation.
ClaI  (1971)
1 site
A T C G A T T A G C T A
* Blocked by Dam methylation.
NeoR/KanR
2003 .. 2797  =  795 bp
264 amino acids  =  29.0 kDa
Product: aminoglycoside phosphotransferase from Tn5
confers resistance to neomycin, kanamycin, and G418 (Geneticin)
NeoR/KanR
2003 .. 2797  =  795 bp
264 amino acids  =  29.0 kDa
Product: aminoglycoside phosphotransferase from Tn5
confers resistance to neomycin, kanamycin, and G418 (Geneticin)
DsRed-Express2
97 .. 774  =  678 bp
225 amino acids  =  25.7 kDa
Product: noncytotoxic tetrameric variant of DsRed fluorescent protein
mammalian codon-optimized
DsRed-Express2
97 .. 774  =  678 bp
225 amino acids  =  25.7 kDa
Product: noncytotoxic tetrameric variant of DsRed fluorescent protein
mammalian codon-optimized
ori
3405 .. 3993  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
3405 .. 3993  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
f1 ori
1023 .. 1478  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
1023 .. 1478  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
SV40 promoter
1611 .. 1968  =  358 bp
SV40 enhancer and early promoter
SV40 promoter
1611 .. 1968  =  358 bp
SV40 enhancer and early promoter
SV40 poly(A) signal
895 .. 1016  =  122 bp
SV40 polyadenylation signal
SV40 poly(A) signal
895 .. 1016  =  122 bp
SV40 polyadenylation signal
AmpR promoter
1505 .. 1609  =  105 bp
AmpR promoter
1505 .. 1609  =  105 bp
MCS
12 .. 89  =  78 bp
multiple cloning site of fluorescent protein plasmids
MCS
12 .. 89  =  78 bp
multiple cloning site of fluorescent protein plasmids
HSV TK poly(A) signal
3029 .. 3076  =  48 bp
herpesvirus thymidine kinase polyadenylation signal
HSV TK poly(A) signal
3029 .. 3076  =  48 bp
herpesvirus thymidine kinase polyadenylation signal
SV40 ori
1819 .. 1954  =  136 bp
SV40 origin of replication
SV40 ori
1819 .. 1954  =  136 bp
SV40 origin of replication
ORF:  97 .. 774  =  678 bp
ORF:  225 amino acids  =  25.7 kDa
ORF:  2818 .. 3267  =  450 bp
ORF:  149 amino acids  =  16.3 kDa
ORF:  2003 .. 2797  =  795 bp
ORF:  264 amino acids  =  29.0 kDa
ORF:  2175 .. 2561  =  387 bp
ORF:  128 amino acids  =  14.6 kDa
ORF:  2312 .. 2848  =  537 bp
ORF:  178 amino acids  =  19.8 kDa
ORF:  3023 .. 3256  =  234 bp
ORF:  77 amino acids  =  8.6 kDa
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