pGFP

Vector for expressing GFP in bacteria.

Sequence Author: Clontech (TaKaRa)

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BspQI - SapI (3336) PciI (3219) AhdI (2331) BmrI (2291) NmeAIII (2184) FspI (2108) PvuI (1962) TsoI (1933) ScaI (1850) XmnI (1731) HindIII (234) BfuAI - BspMI (239) SphI (244) PstI - SbfI (250) SalI (252) XbaI (258) BamHI (264) AvaI - BsoBI - TspMI - XmaI (269) SmaI (271) Acc65I (273) AgeI (276) KpnI (277) BtgI - NcoI - StyI (454) MscI (459) BsrGI (564) BsaAI - PmlI (613) BstZ17I (738) HpaI (777) MfeI (848) BtgZI (869) BstBI (910) BsmI (1005) EcoRI (1014) StuI (1074) SpeI (1078) EagI (1084) BsiWI (1088) PspOMI (1093) ApaI - BanII (1097) PfoI (1151) BstAPI (1290) AflII (1346) ZraI (1410) AatII (1412) SspI (1526) pGFP 3344 bp
BspQI  (3336)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different BspQI sites may not be compatible.
SapI  (3336)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
PciI  (3219)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
AhdI  (2331)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
BmrI  (2291)
1 site
A C T G G G ( N ) 4 N T G A C C C ( N ) 4

The 1-base overhangs produced by BmrI may be hard to ligate.
Sticky ends from different BmrI sites may not be compatible.
Unlike most restriction enzymes, BmrI can cleave DNA in the absence of magnesium.
NmeAIII  (2184)
1 site
G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19

Efficient cleavage requires at least two copies of the NmeAIII recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
FspI  (2108)
1 site
T G C G C A A C G C G T
PvuI  (1962)
1 site
C G A T C G G C T A G C
TsoI  (1933)
1 site
T A R C C A ( N ) 9 N N A T Y G G T ( N ) 9

Sticky ends from different TsoI sites may not be compatible.
After cleavage, TsoI can remain bound to DNA and alter its electrophoretic mobility.
For full activity, add fresh S-adenosylmethionine (SAM).
ScaI  (1850)
1 site
A G T A C T T C A T G A
XmnI  (1731)
1 site
G A A N N N N T T C C T T N N N N A A G
HindIII  (234)
1 site
A A G C T T T T C G A A
BfuAI  (239)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BfuAI recognition sequence.
Sticky ends from different BfuAI sites may not be compatible.
BfuAI is typically used at 50°C, but is 50% active at 37°C.
BspMI  (239)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BspMI recognition sequence.
Sticky ends from different BspMI sites may not be compatible.
SphI  (244)
1 site
G C A T G C C G T A C G
PstI  (250)
1 site
C T G C A G G A C G T C
SbfI  (250)
1 site
C C T G C A G G G G A C G T C C
SalI  (252)
1 site
G T C G A C C A G C T G
XbaI  (258)
1 site
T C T A G A A G A T C T
BamHI  (264)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
AvaI  (269)
1 site
C Y C G R G G R G C Y C

Sticky ends from different AvaI sites may not be compatible.
BsoBI  (269)
1 site
C Y C G R G G R G C Y C

Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
TspMI  (269)
1 site
C C C G G G G G G C C C
XmaI  (269)
1 site
C C C G G G G G G C C C

Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
SmaI  (271)
1 site
C C C G G G G G G C C C

SmaI can be used at 37°C for brief incubations.
Acc65I  (273)
1 site
G G T A C C C C A T G G
AgeI  (276)
1 site
A C C G G T T G G C C A
KpnI  (277)
1 site
G G T A C C C C A T G G
BtgI  (454)
1 site
C C R Y G G G G Y R C C

Sticky ends from different BtgI sites may not be compatible.
NcoI  (454)
1 site
C C A T G G G G T A C C
StyI  (454)
1 site
C C W W G G G G W W C C

Sticky ends from different StyI sites may not be compatible.
MscI  (459)
1 site
T G G C C A A C C G G T
BsrGI  (564)
1 site
T G T A C A A C A T G T

BsrGI is typically used at 37°C, but is even more active at 60°C.
BsaAI  (613)
1 site
Y A C G T R R T G C A Y
PmlI  (613)
1 site
C A C G T G G T G C A C
BstZ17I  (738)
1 site
G T A T A C C A T A T G
HpaI  (777)
1 site
G T T A A C C A A T T G
MfeI  (848)
1 site
C A A T T G G T T A A C
BtgZI  (869)
1 site
G C G A T G ( N ) 10 C G C T A C ( N ) 10 ( N ) 4

Sticky ends from different BtgZI sites may not be compatible.
After cleavage, BtgZI can remain bound to DNA and alter its electrophoretic mobility.
BtgZI is typically used at 60°C, but is 75% active at 37°C.
BstBI  (910)
1 site
T T C G A A A A G C T T
BsmI  (1005)
1 site
G A A T G C N C T T A C G N

Sticky ends from different BsmI sites may not be compatible.
EcoRI  (1014)
1 site
G A A T T C C T T A A G
StuI  (1074)
1 site
A G G C C T T C C G G A
SpeI  (1078)
1 site
A C T A G T T G A T C A
EagI  (1084)
1 site
C G G C C G G C C G G C
BsiWI  (1088)
1 site
C G T A C G G C A T G C

BsiWI is typically used at 55°C, but is 50% active at 37°C.
PspOMI  (1093)
1 site
G G G C C C C C C G G G
ApaI  (1097)
1 site
G G G C C C C C C G G G

ApaI can be used between 25°C and 37°C.
BanII  (1097)
1 site
G R G C Y C C Y C G R G

Sticky ends from different BanII sites may not be compatible.
PfoI  (1151)
1 site
T C C N G G A A G G N C C T

Sticky ends from different PfoI sites may not be compatible.
BstAPI  (1290)
1 site
G C A N N N N N T G C C G T N N N N N A C G

Sticky ends from different BstAPI sites may not be compatible.
AflII  (1346)
1 site
C T T A A G G A A T T C
ZraI  (1410)
1 site
G A C G T C C T G C A G
AatII  (1412)
1 site
G A C G T C C T G C A G
SspI  (1526)
1 site
A A T A T T T T A T A A
AmpR
1544 .. 2404  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   1544 .. 1612  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
1544 .. 2404  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   1613 .. 2404  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
1544 .. 2404  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
ATG
217 .. 219  =  3 bp
1 amino acid  =  149.2 Da
Product: lacZ start codon
ATG
217 .. 219  =  3 bp
1 amino acid  =  149.2 Da
Product: lacZ start codon
GFP
289 .. 1005  =  717 bp
238 amino acids  =  26.9 kDa
Product: Aequoria victoria green fluorescent protein
GFP
289 .. 1005  =  717 bp
238 amino acids  =  26.9 kDa
Product: Aequoria victoria green fluorescent protein
ori
2575 .. 3163  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
2575 .. 3163  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
AmpR promoter
1439 .. 1543  =  105 bp
AmpR promoter
1439 .. 1543  =  105 bp
lac promoter
143 .. 173  =  31 bp
3 segments
   Segment 1:  -35  
   143 .. 148  =  6 bp
promoter for the E. coli lac operon
lac promoter
143 .. 173  =  31 bp
3 segments
   Segment 2:  
   149 .. 166  =  18 bp
promoter for the E. coli lac operon
lac promoter
143 .. 173  =  31 bp
3 segments
   Segment 3:  -10  
   167 .. 173  =  7 bp
promoter for the E. coli lac operon
lac promoter
143 .. 173  =  31 bp
3 segments
promoter for the E. coli lac operon
lac operator
181 .. 197  =  17 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
lac operator
181 .. 197  =  17 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
ORF:  217 .. 1005  =  789 bp
ORF:  262 amino acids  =  29.6 kDa
ORF:  980 .. 1279  =  300 bp
ORF:  99 amino acids  =  11.1 kDa
ORF:  1544 .. 2404  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
ORF:  885 .. 1145  =  261 bp
ORF:  86 amino acids  =  9.7 kDa
ORF:  2008 .. 2274  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
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