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Plasmid Files

pBluescript-FL

cDNA cloning vector derived from pBluescript II KS(-) by replacing the SmaI site with a fragment containing two PflMI sites.

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pBluescript-FL.dna
Map and Sequence File:    Download    Open   
Sequence Author:  I.M.A.G.E. Consortium
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NgoMIV (129) XmnI (2669) BsaHI (2607) ScaI (2550) TatI (2548) NmeAIII (2218) BpmI (2140) BsaI (2131) AhdI (2070) AlwNI (1593) NaeI (131) BtgZI (229) BsaAI (234) DraIII (237) AanI - PsiI (362) Eco53kI (655) SacI (657) BtgI (661) AleI (663) SacII (664) BstXI (665) EagI - NotI (670) XbaI (677) SpeI (683) BamHI (689) PflMI (699) SfiI (709) MscI (712) PflMI (719) PstI (729) EcoRI (731) EcoRV (739) HindIII (743) BspDI - ClaI (750) SalI (758) AccI (759) HincII (760) AbsI - AvaI - BsoBI - PaeR7I - PspXI - XhoI (764) BmeT110I (765) EcoO109I - PspOMI (773) ApaI (777) Acc65I (779) KpnI (783) BspQI - SapI (1061) AflIII - PciI (1177) NspI (1181) pBluescript-FL 2985 bp
NgoMIV  (129)
1 site
G C C G G C C G G C C G

Efficient cleavage requires at least two copies of the NgoMIV recognition sequence.
XmnI  (2669)
1 site
G A A N N N N T T C C T T N N N N A A G
BsaHI  (2607)
1 site
G R C G Y C C Y G C R G

BsaHI is typically used at 37°C, but is even more active at 60°C.
ScaI  (2550)
1 site
A G T A C T T C A T G A
TatI  (2548)
1 site
W G T A C W W C A T G W
NmeAIII  (2218)
1 site
G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19

Efficient cleavage requires at least two copies of the NmeAIII recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
BpmI  (2140)
1 site
C T G G A G ( N ) 14 N N G A C C T C ( N ) 14

Efficient cleavage requires at least two copies of the BpmI recognition sequence.
Sticky ends from different BpmI sites may not be compatible.
After cleavage, BpmI can remain bound to DNA and alter its electrophoretic mobility.
BpmI quickly loses activity at 37°C.
BsaI  (2131)
1 site
G G T C T C N C C A G A G N ( N ) 4

Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
AhdI  (2070)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
AlwNI  (1593)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
NaeI  (131)
1 site
G C C G G C C G G C C G

Efficient cleavage requires at least two copies of the NaeI recognition sequence.
BtgZI  (229)
1 site
G C G A T G ( N ) 10 C G C T A C ( N ) 10 ( N ) 4

Sticky ends from different BtgZI sites may not be compatible.
After cleavage, BtgZI can remain bound to DNA and alter its electrophoretic mobility.
BtgZI is typically used at 60°C, but is 75% active at 37°C.
BsaAI  (234)
1 site
Y A C G T R R T G C A Y
DraIII  (237)
1 site
C A C N N N G T G G T G N N N C A C

Sticky ends from different DraIII sites may not be compatible.
AanI  (362)
1 site
T T A T A A A A T A T T
PsiI  (362)
1 site
T T A T A A A A T A T T
Eco53kI  (655)
1 site
G A G C T C C T C G A G
SacI  (657)
1 site
G A G C T C C T C G A G
BtgI  (661)
1 site