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pNL3.1[Nluc/minP]

Vector with a minimal promoter for measuring the activity of transcriptional response elements using a NanoLuc® luciferase assay.

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pNL3.1[Nluc minP].dna
Map and Sequence File:    Download    Open   
Sequence Author:  Promega
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AarI - BfuAI - BspMI (3121) RVprimer3 (3100 .. 3119) BsmBI (2948) SpeI (2935) BsaHI (2643) BstZ17I (2616) SacII (2500) PvuI (2476) Bsu36I (2462) MscI (2340) AhdI (2106) BstEII (2031) BstXI - PstI (2028) AleI (2026) NotI (2004) BspHI (1904) AlwNI (1600) BglI - SfiI (8) Acc65I (14) KpnI (18) Eco53kI (23) BanII - SacI (25) NheI (27) BmtI (31) AbsI - PaeR7I - PspXI - XhoI (33) EcoRV (41) BglII (46) BglI - SfiI (59) HindIII (65) NcoI - StyI (139) PflFI - Tth111I (204) EcoNI (213) BtgZI (479) PpuMI - SanDI (532) XmnI (643) XbaI (666) FseI (685) AanI - AanI - PsiI (806) HpaI (826) MfeI (835) BamHI (928) SalI (934) PshAI (999) RVprimer4 (985 .. 1004) AfeI (1060) BspQI - SapI (1068) AflIII - PciI (1184) NspI (1188) BciVI (1387) ApaLI (1498) BaeGI - Bme1580I (1502) pNL3.1[Nluc/minP] 3151 bp
AarI  (3121)
1 site
C A C C T G C ( N ) 4 G T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the AarI recognition sequence.
Sticky ends from different AarI sites may not be compatible.
After cleavage, AarI can remain bound to DNA and alter its electrophoretic mobility.
BfuAI  (3121)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BfuAI recognition sequence.
Sticky ends from different BfuAI sites may not be compatible.
BfuAI is typically used at 50°C, but is 50% active at 37°C.
BspMI  (3121)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BspMI recognition sequence.
Sticky ends from different BspMI sites may not be compatible.
BsmBI  (2948)
1 site
C G T C T C N G C A G A G N ( N ) 4

Sticky ends from different BsmBI sites may not be compatible.
SpeI  (2935)
1 site
A C T A G T T G A T C A
BsaHI  (2643)
1 site
G R C G Y C C Y G C R G

BsaHI is typically used at 37°C, but is even more active at 60°C.
BstZ17I  (2616)
1 site
G T A T A C C A T A T G
SacII  (2500)
1 site
C C G C G G G G C G C C

Efficient cleavage requires at least two copies of the SacII recognition sequence.
PvuI  (2476)
1 site
C G A T C G G C T A G C
Bsu36I  (2462)
1 site
C C T N A G G G G A N T C C

Sticky ends from different Bsu36I sites may not be compatible.
MscI  (2340)
1 site
T G G C C A A C C G G T
AhdI  (2106)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
BstEII  (2031)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
BstXI  (2028)
1 site
C C A N N N N N N T G G G G T N N N N N N A C C

Sticky ends from different BstXI sites may not be compatible.
PstI  (2028)
1 site
C T G C A G G A C G T C
AleI  (2026)
1 site
C A C N N N N G T G G T G N N N N C A C
NotI  (2004)
1 site
G C G G C C G C C G C C G G C G
BspHI  (1904)
1 site
T C A T G A A G T A C T
AlwNI  (1600)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
BglI  (8)
2 sites
G C C N N N N N G G C C G G N N N N N C C G

Sticky ends from different BglI sites may not be compatible.
SfiI  (8)
2 sites
G G C C N N N N N G G C C C C G G N N N N N C C G G

Efficient cleavage requires at least two copies of the SfiI recognition sequence.
Sticky ends from different SfiI sites may not be compatible.
Acc65I  (14)
1 site
G G T A C C C C A T G G
KpnI  (18)
1 site
G G T A C C C C A T G G
Eco53kI  (23)
1 site
G A G C T C C T C G A G
BanII  (25)
1 site
G R G C Y C C Y C G R G

Sticky ends from different BanII sites may not be compatible.
SacI  (25)
1 site
G A G C T C C T C G A G
NheI  (27)
1 site
G C T A G C C G A T C G
BmtI  (31)
1 site
G C T A G C C G A T C G
AbsI  (33)
1 site
C C T C G A G G G G A G C T C C
PaeR7I  (33)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (33)
1 site
V C T C G A G B B G A G C T C V
XhoI  (33)
1 site
C T C G A G G A G C T C
EcoRV  (41)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
BglII  (46)
1 site
A G A T C T T C T A G A
BglI  (59)
2 sites
G C C N N N N N G G C C G G N N N N N C C G

Sticky ends from different BglI sites may not be compatible.
SfiI  (59)
2 sites
G G C C N N N N N G G C C C C G G N N N N N C C G G

Efficient cleavage requires at least two copies of the SfiI recognition sequence.
Sticky ends from different SfiI sites may not be compatible.
HindIII  (65)
1 site
A A G C T T T T C G A A
NcoI  (139)
1 site
C C A T G G G G T A C C
StyI  (139)
1 site
C C W W G G G G W W C C

Sticky ends from different StyI sites may not be compatible.
PflFI  (204)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (204)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
EcoNI  (213)
1 site
C C T N N N N N A G G G G A N N N N N T C C

The 1-base overhangs produced by EcoNI may be hard to ligate.
Sticky ends from different EcoNI sites may not be compatible.
BtgZI  (479)
1 site
G C G A T G ( N ) 10 C G C T A C ( N ) 10 ( N ) 4

Sticky ends from different BtgZI sites may not be compatible.
After cleavage, BtgZI can remain bound to DNA and alter its electrophoretic mobility.
BtgZI is typically used at 60°C, but is 75% active at 37°C.
PpuMI  (532)
1 site
R G G W C C Y Y C C W G G R

Sticky ends from different PpuMI sites may not be compatible.
SanDI  (532)
1 site
G G G W C C C C C C W G G G

Sticky ends from different SanDI sites may not be compatible.
XmnI  (643)
1 site
G A A N N N N T T C C T T N N N N A A G
XbaI  (666)
1 site
T C T A G A A G A T C T
FseI  (685)
1 site
G G C C G G C C C C G G C C G G

FseI gradually loses activity when stored at -20°C.
AanI  (806)
1 site
T T A T A A A A T A T T
AanI  (806)
1 site
T T A T A A A A T A T T
PsiI  (806)
1 site
T T A T A A A A T A T T
HpaI  (826)
1 site
G T T A A C C A A T T G
MfeI  (835)
1 site
C A A T T G G T T A A C
BamHI  (928)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF™ (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
SalI  (934)
1 site
G T C G A C C A G C T G
PshAI  (999)
1 site
G A C N N N N G T C C T G N N N N C A G

PshAI quickly loses activity at 37°C, but can be used at 25°C for long incubations.
AfeI  (1060)
1 site
A G C G C T T C G C G A
BspQI  (1068)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different BspQI sites may not be compatible.
SapI  (1068)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
AflIII  (1184)
1 site
A C R Y G T T G Y R C A

Sticky ends from different AflIII sites may not be compatible.
PciI  (1184)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
NspI  (1188)
1 site
R C A T G Y Y G T A C R
BciVI  (1387)
1 site
G T A T C C ( N ) 5 N C A T A G G ( N ) 5

The 1-base overhangs produced by BciVI may be hard to ligate.
Sticky ends from different BciVI sites may not be compatible.
ApaLI  (1498)
1 site
G T G C A C C A C G T G
BaeGI  (1502)
1 site
G K G C M C C M C G K G

Sticky ends from different BaeGI sites may not be compatible.
Bme1580I  (1502)
1 site
G K G C M C C M C G K G

Sticky ends from different Bme1580I sites may not be compatible.
RVprimer3
20-mer  /  50% GC
1 binding site
3100 .. 3119  =  20 annealed bases
Tm  =  54°C
RVprimer4
20-mer  /  65% GC
1 binding site
985 .. 1004  =  20 annealed bases
Tm  =  61°C
AmpR
2033 .. 2893  =  861 bp
286 amino acids  =  31.6 kDa
   Segment 2:  
   2033 .. 2824  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
2033 .. 2893  =  861 bp
286 amino acids  =  31.6 kDa
   Segment 1:  signal sequence  
   2825 .. 2893  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
2033 .. 2893  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
ori
1245 .. 1833  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
1245 .. 1833  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
Nluc
141 .. 656  =  516 bp
171 amino acids  =  19.1 kDa
Product: NanoLuc® luciferase
human codon-optimized
Nluc
141 .. 656  =  516 bp
171 amino acids  =  19.1 kDa
Product: NanoLuc® luciferase
human codon-optimized
SV40 poly(A) signal
705 .. 826  =  122 bp
SV40 polyadenylation signal
SV40 poly(A) signal
705 .. 826  =  122 bp
SV40 polyadenylation signal
pause site
3060 .. 3151  =  92 bp
RNA polymerase II transcriptional pause signal from the human α2 globin gene
pause site
3060 .. 3151  =  92 bp
RNA polymerase II transcriptional pause signal from the human α2 globin gene
MCS
1 .. 70  =  70 bp
multiple cloning site
MCS
1 .. 70  =  70 bp
multiple cloning site
poly(A) signal
2998 .. 3046  =  49 bp
synthetic polyadenylation signal
poly(A) signal
2998 .. 3046  =  49 bp
synthetic polyadenylation signal
minP
77 .. 108  =  32 bp
minimal TATA-box promoter with low basal activity
minP
77 .. 108  =  32 bp
minimal TATA-box promoter with low basal activity
ORF:  90 .. 656  =  567 bp
ORF:  188 amino acids  =  20.9 kDa
ORF:  2163 .. 2429  =  267 bp
ORF:  88 amino acids  =  9.3 kDa
ORF:  791 .. 1033  =  243 bp
ORF:  80 amino acids  =  9.0 kDa
ORF:  2033 .. 2893  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
ORF:  69 .. 404  =  336 bp
ORF:  111 amino acids  =  12.5 kDa
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