pDEST26

Gateway® destination vector for high-level expression of N-terminally 6xHis-tagged proteins in mammalian cells.

Sequence Author: Thermo Fisher (Invitrogen)

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CMV enhancer AflIII - PciI (7092) AhdI (6204) XmnI (5604) PfoI (5165) BstBI (4910) RsrII (4744) PflFI - Tth111I (4346) PluTI (4231) SfoI (4229) NarI (4228) KasI (4227) AflII (4082) HindIII (4050) StuI (4033) BseRI (4030) SfiI (3987) CsiI - SexAI * (3801) KpnI (3688) SnaBI (294) Eco53kI (520) SacI (522) BbsI (588) SacII (626) ATG 6xHis XbaI * (662) NotI (797) EcoRI (1117) PasI - PflMI * (1349) BglII (1564) BstZ17I (1652) BbvCI (1842) AvaI - BsoBI - TspMI - XmaI (1986) SmaI - SrfI (1988) BmgBI (2022) SalI (2245) M13 fwd NheI (2475) BmtI (2479) BclI * (2751) MfeI (2844) HpaI (2857) DraIII (3351) Acc65I (3684) pDEST™26 7481 bp
AflIII  (7092)
1 site
A C R Y G T T G Y R C A

Sticky ends from different AflIII sites may not be compatible.
PciI  (7092)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
AhdI  (6204)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
XmnI  (5604)
1 site
G A A N N N N T T C C T T N N N N A A G
PfoI  (5165)
1 site
T C C N G G A A G G N C C T

Sticky ends from different PfoI sites may not be compatible.
BstBI  (4910)
1 site
T T C G A A A A G C T T
RsrII  (4744)
1 site
C G G W C C G G C C W G G C

Efficient cleavage requires at least two copies of the RsrII recognition sequence.
Sticky ends from different RsrII sites may not be compatible.
For full activity, add fresh DTT.
PflFI  (4346)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (4346)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
PluTI  (4231)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the PluTI recognition sequence.
SfoI  (4229)
1 site
G G C G C C C C G C G G
NarI  (4228)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the NarI recognition sequence.
KasI  (4227)
1 site
G G C G C C C C G C G G
AflII  (4082)
1 site
C T T A A G G A A T T C
HindIII  (4050)
1 site
A A G C T T T T C G A A
StuI  (4033)
1 site
A G G C C T T C C G G A
BseRI  (4030)
1 site
G A G G A G ( N ) 8 N N C T C C T C ( N ) 8

Sticky ends from different BseRI sites may not be compatible.
BseRI quickly loses activity at 37°C.
Prolonged incubation with BseRI may lead to degradation of the DNA.
SfiI  (3987)
1 site
G G C C N N N N N G G C C C C G G N N N N N C C G G

Efficient cleavage requires at least two copies of the SfiI recognition sequence.
Sticky ends from different SfiI sites may not be compatible.
CsiI  (3801)
1 site
A C C W G G T T G G W C C A

Sticky ends from different CsiI sites may not be compatible.
SexAI  (3801)
1 site
A C C W G G T T G G W C C A
* Blocked by Dcm methylation.
Sticky ends from different SexAI sites may not be compatible.
KpnI  (3688)
1 site
G G T A C C C C A T G G
SnaBI  (294)
1 site
T A C G T A A T G C A T
Eco53kI  (520)
1 site
G A G C T C C T C G A G
SacI  (522)
1 site
G A G C T C C T C G A G
BbsI  (588)
1 site
G A A G A C N N C T T C T G N N ( N ) 4

Sticky ends from different BbsI sites may not be compatible.
BbsI gradually loses activity when stored at -20°C.
SacII  (626)
1 site
C C G C G G G G C G C C

Efficient cleavage requires at least two copies of the SacII recognition sequence.
XbaI  (662)
1 site
T C T A G A A G A T C T
* Blocked by Dam methylation.
NotI  (797)
1 site
G C G G C C G C C G C C G G C G
EcoRI  (1117)
1 site
G A A T T C C T T A A G
PasI  (1349)
1 site
C C C W G G G G G G W C C C

Sticky ends from different PasI sites may not be compatible.
PflMI  (1349)
1 site
C C A N N N N N T G G G G T N N N N N A C C
* Blocked by Dcm methylation.
Sticky ends from different PflMI sites may not be compatible.
BglII  (1564)
1 site
A G A T C T T C T A G A
BstZ17I  (1652)
1 site
G T A T A C C A T A T G
BbvCI  (1842)
1 site
C C T C A G C G G A G T C G
AvaI  (1986)
1 site
C Y C G R G G R G C Y C

Sticky ends from different AvaI sites may not be compatible.
BsoBI  (1986)
1 site
C Y C G R G G R G C Y C

Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
TspMI  (1986)
1 site
C C C G G G G G G C C C
XmaI  (1986)
1 site
C C C G G G G G G C C C

Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
SmaI  (1988)
1 site
C C C G G G G G G C C C

SmaI can be used at 37°C for brief incubations.
SrfI  (1988)
1 site
G C C C G G G C C G G G C C C G
BmgBI  (2022)
1 site
C A C G T C G T G C A G

This recognition sequence is asymmetric, so ligating blunt ends generated by BmgBI will not always regenerate a BmgBI site.
SalI  (2245)
1 site
G T C G A C C A G C T G
NheI  (2475)
1 site
G C T A G C C G A T C G
BmtI  (2479)
1 site
G C T A G C C G A T C G
BclI  (2751)
1 site
T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
MfeI  (2844)
1 site
C A A T T G G T T A A C
HpaI  (2857)
1 site
G T T A A C C A A T T G
DraIII  (3351)
1 site
C A C N N N G T G G T G N N N C A C

Sticky ends from different DraIII sites may not be compatible.
Acc65I  (3684)
1 site
G G T A C C C C A T G G
AmpR
5417 .. 6277  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   5417 .. 5485  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
5417 .. 6277  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   5486 .. 6277  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
5417 .. 6277  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
NeoR/KanR
4100 .. 4894  =  795 bp
264 amino acids  =  29.0 kDa
Product: aminoglycoside phosphotransferase from Tn5
confers resistance to neomycin, kanamycin, and G418 (Geneticin®)
NeoR/KanR
4100 .. 4894  =  795 bp
264 amino acids  =  29.0 kDa
Product: aminoglycoside phosphotransferase from Tn5
confers resistance to neomycin, kanamycin, and G418 (Geneticin®)
CmR
904 .. 1563  =  660 bp
219 amino acids  =  25.7 kDa
Product: chloramphenicol acetyltransferase
confers resistance to chloramphenicol
CmR
904 .. 1563  =  660 bp
219 amino acids  =  25.7 kDa
Product: chloramphenicol acetyltransferase
confers resistance to chloramphenicol
ori
6448 .. 7036  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
6448 .. 7036  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
f1 ori
3118 .. 3573  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
3118 .. 3573  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
SV40 promoter
3692 .. 4049  =  358 bp
SV40 enhancer and early promoter
SV40 promoter
3692 .. 4049  =  358 bp
SV40 enhancer and early promoter
ccdB
1905 .. 2210  =  306 bp
101 amino acids  =  11.7 kDa
Product: CcdB, a bacterial toxin that poisons DNA gyrase
Plasmids containing the ccdB gene cannot be propagated in standard E. coli strains.
ccdB
1905 .. 2210  =  306 bp
101 amino acids  =  11.7 kDa
Product: CcdB, a bacterial toxin that poisons DNA gyrase
Plasmids containing the ccdB gene cannot be propagated in standard E. coli strains.
CMV enhancer
15 .. 318  =  304 bp
human cytomegalovirus immediate early enhancer
CMV enhancer
15 .. 318  =  304 bp
human cytomegalovirus immediate early enhancer
CMV promoter
319 .. 522  =  204 bp
human cytomegalovirus (CMV) immediate early promoter
CMV promoter
319 .. 522  =  204 bp
human cytomegalovirus (CMV) immediate early promoter
SV40 poly(A) signal
2858 .. 2992  =  135 bp
SV40 polyadenylation signal
SV40 poly(A) signal
2858 .. 2992  =  135 bp
SV40 polyadenylation signal
attR1
671 .. 795  =  125 bp
recombination site for the Gateway® LR reaction
attR1
671 .. 795  =  125 bp
recombination site for the Gateway® LR reaction
attR2
2251 .. 2375  =  125 bp
recombination site for the Gateway® LR reaction
attR2
2251 .. 2375  =  125 bp
recombination site for the Gateway® LR reaction
AmpR promoter
5312 .. 5416  =  105 bp
AmpR promoter
5312 .. 5416  =  105 bp
poly(A) signal
4958 .. 5006  =  49 bp
synthetic polyadenylation signal
poly(A) signal
4958 .. 5006  =  49 bp
synthetic polyadenylation signal
lac UV5 promoter
820 .. 850  =  31 bp
3 segments
   Segment 1:  -35  
   820 .. 825  =  6 bp
E. coli lac promoter with an "up" mutation
lac UV5 promoter
820 .. 850  =  31 bp
3 segments
   Segment 2:  
   826 .. 843  =  18 bp
E. coli lac promoter with an "up" mutation
lac UV5 promoter
820 .. 850  =  31 bp
3 segments
   Segment 3:  -10  
   844 .. 850  =  7 bp
E. coli lac promoter with an "up" mutation
lac UV5 promoter
820 .. 850  =  31 bp
3 segments
E. coli lac promoter with an "up" mutation
ATG
632 .. 634  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
ATG
632 .. 634  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
6xHis
644 .. 661  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
6xHis
644 .. 661  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
T7 promoter
2408 .. 2426  =  19 bp
promoter for bacteriophage T7 RNA polymerase
T7 promoter
2408 .. 2426  =  19 bp
promoter for bacteriophage T7 RNA polymerase
M13 fwd
2437 .. 2453  =  17 bp
common sequencing primer, one of multiple similar variants
M13 fwd
2437 .. 2453  =  17 bp
common sequencing primer, one of multiple similar variants
SV40 ori
3900 .. 4035  =  136 bp
SV40 origin of replication
SV40 ori
3900 .. 4035  =  136 bp
SV40 origin of replication
ORF:  904 .. 1563  =  660 bp
ORF:  219 amino acids  =  25.7 kDa
ORF:  4100 .. 4894  =  795 bp
ORF:  264 amino acids  =  29.0 kDa
ORF:  5417 .. 6277  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
ORF:  7436 .. 212  =  258 bp
ORF:  85 amino acids  =  9.6 kDa
ORF:  1905 .. 2210  =  306 bp
ORF:  101 amino acids  =  11.7 kDa
ORF:  4272 .. 4658  =  387 bp
ORF:  128 amino acids  =  14.6 kDa
ORF:  401 .. 658  =  258 bp
ORF:  85 amino acids  =  9.3 kDa
ORF:  4409 .. 4945  =  537 bp
ORF:  178 amino acids  =  19.8 kDa
ORF:  5881 .. 6147  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
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