Resources
Plasmid Files

pcDNA™4/TO

Mammalian vector with a Zeocin™ resistance gene for tetracycline-inducible expression of proteins.

To see this sequence with restriction sites, features, and translations, please download
 SnapGene or the free  SnapGene Viewer.

pcDNA4 TO Sequence and MappcDNA4 TO.dna
Map and Sequence File   
Sequence Author:  Invitrogen (Life Technologies)
Download Free Trial Get SnapGene Viewer

 SspI (4959) ScaI (4635) PvuI (4525) FspI (4377) BsaI (4216) AhdI (4155) PciI (3265) BspQI - SapI (3149) BstZ17I (2886) BsmI (2834) AanI (2773) MfeI (161) Bpu10I (180) NruI (208) MluI (228) NdeI (484) SnaBI (590) CMV promoter tet operator tet operator BsmBI (893) BspEI (955) PmeI (971) AflII (975) HindIII (978) Acc65I (984) KpnI (988) BamHI (996) BstXI (1015) EcoRI (1019) PstI (1028) EcoRV (1031) BstXI (1041) NotI (1046) PaeR7I - PspXI - XhoI (1052) XbaI (1058) EcoO109I - PspOMI (1064) ApaI (1068) PmeI (1073) AanI (1723) StuI (2120) AvrII (2121) MscI (2253) BssHII - MauBI (2286) SgrAI (2364) BmgBI (2384) FseI (2526) pcDNA™4/TO 5078 bp
SspI  (4959)
1 site
A A T A T T T T A T A A
ScaI  (4635)
1 site
A G T A C T T C A T G A
PvuI  (4525)
1 site
C G A T C G G C T A G C
FspI  (4377)
1 site
T G C G C A A C G C G T
BsaI  (4216)
1 site
G G T C T C N C C A G A G N ( N ) 4

Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
AhdI  (4155)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
PciI  (3265)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
BspQI  (3149)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different BspQI sites may not be compatible.
SapI  (3149)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be
mixed before removing an aliquot.
BstZ17I  (2886)
1 site
G T A T A C C A T A T G
BsmI  (2834)
1 site
G A A T G C N C T T A C G N

Sticky ends from different BsmI sites may not be compatible.
AanI  (2773)
2 sites
T T A T A A A A T A T T
MfeI  (161)
1 site
C A A T T G G T T A A C
Bpu10I  (180)
1 site
C C T N A G C G G A N T C G

Efficient cleavage requires at least two copies of the Bpu10I
recognition sequence.
This recognition sequence is asymmetric, so ligating sticky ends
generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
NruI  (208)
1 site
T C G C G A A G C G C T
MluI  (228)
1 site
A C G C G T T G C G C A
NdeI  (484)
1 site
C A T A T G G T A T A C

Prolonged incubation with NdeI may lead to removal of additional
nucleotides.
SnaBI  (590)
1 site
T A C G T A A T G C A T
BsmBI  (893)
1 site
C G T C T C N G C A G A G N ( N ) 4

Sticky ends from different BsmBI sites may not be compatible.
BspEI  (955)
1 site
T C C G G A A G G C C T
PmeI  (971)
2 sites
G T T T A A A C C A A A T T T G
AflII  (975)
1 site
C T T A A G G A A T T C

The sticky ends produced by AflII are hard to ligate.
HindIII  (978)
1 site
A A G C T T T T C G A A
Acc65I  (984)
1 site
G G T A C C C C A T G G
KpnI  (988)
1 site
G G T A C C C C A T G G
BamHI  (996)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF™ (but not the original BamHI) can
remain bound to DNA and alter its electrophoretic mobility.
BstXI  (1015)
2 sites
C C A N N N N N N T G G G G T N N N N N N A C C

Sticky ends from different BstXI sites may not be compatible.
EcoRI  (1019)
1 site
G A A T T C C T T A A G
PstI  (1028)
1 site
C T G C A G G A C G T C
EcoRV  (1031)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to
delete a base after cleavage.
BstXI  (1041)
2 sites
C C A N N N N N N T G G G G T N N N N N N A C C

Sticky ends from different BstXI sites may not be compatible.
NotI  (1046)
1 site
G C G G C C G C C G C C G G C G
PaeR7I  (1052)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (1052)
1 site
V C T C G A G B B G A G C T C V
XhoI  (1052)
1 site
C T C G A G G A G C T C
XbaI  (1058)
1 site
T C T A G A A G A T C T
EcoO109I  (1064)
1 site
R G G N C C Y Y C C N G G R

Sticky ends from different EcoO109I sites may not be compatible.
PspOMI  (1064)
1 site
G G G C C C C C C G G G
ApaI  (1068)
1 site
G G G C C C C C C G G G

ApaI can be used between 25°C and 37°C.
PmeI  (1073)
2 sites
G T T T A A A C C A A A T T T G
AanI  (1723)
2 sites
T T A T A A A A T A T T
StuI  (2120)
1 site
A G G C C T T C C G G A
AvrII  (2121)
1 site
C C T A G G G G A T C C
MscI  (2253)
1 site
T G G C C A A C C G G T
BssHII  (2286)
1 site
G C G C G C C G C G C G

BssHII is typically used at 50°C, but is 75% active at 37°C.
MauBI  (2286)
1 site
C G C G C G C G G C G C G C G C
SgrAI  (2364)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI
recognition sequence.
BmgBI  (2384)
1 site
C A C G T C G T G C A G

This recognition sequence is asymmetric, so ligating blunt ends
generated by BmgBI will not always regenerate a BmgBI site.
FseI  (2526)
1 site
G G C C G G C C C C G G C C G G

FseI gradually loses activity when stored at -20°C.
AmpR
4082 .. 4942  =  861 bp
286 amino acids  =  31.6 kDa
   Segment 2:  
   4082 .. 4873  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and
related antibiotics
AmpR
4082 .. 4942  =  861 bp
286 amino acids  =  31.6 kDa
   Segment 1:  signal sequence  
   4874 .. 4942  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and
related antibiotics
AmpR
4082 .. 4942  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and
related antibiotics
ori
3326 .. 3911  =  586 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin
of replication
ori
3326 .. 3911  =  586 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin
of replication
f1 ori
1365 .. 1793  =  429 bp
f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis
f1 ori
1365 .. 1793  =  429 bp
f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis
CMV enhancer
235 .. 614  =  380 bp
human cytomegalovirus immediate early enhancer
CMV enhancer
235 .. 614  =  380 bp
human cytomegalovirus immediate early enhancer
BleoR
2250 .. 2624  =  375 bp
124 amino acids  =  13.8 kDa
Product: antibiotic-binding protein
confers resistance to bleomycin, phleomycin, and
Zeocin™
BleoR
2250 .. 2624  =  375 bp
124 amino acids  =  13.8 kDa
Product: antibiotic-binding protein
confers resistance to bleomycin, phleomycin, and
Zeocin™
SV40 promoter
1807 .. 2136  =  330 bp
SV40 enhancer and early promoter
SV40 promoter
1807 .. 2136  =  330 bp
SV40 enhancer and early promoter
bGH poly(A) signal
1095 .. 1319  =  225 bp
bovine growth hormone polyadenylation signal
bGH poly(A) signal
1095 .. 1319  =  225 bp
bovine growth hormone polyadenylation signal
CMV promoter
615 .. 818  =  204 bp
human cytomegalovirus (CMV) immediate early
promoter
CMV promoter
615 .. 818  =  204 bp
human cytomegalovirus (CMV) immediate early
promoter
SV40 poly(A) signal
2754 .. 2875  =  122 bp
SV40 polyadenylation signal
SV40 poly(A) signal
2754 .. 2875  =  122 bp
SV40 polyadenylation signal
MCS
968 .. 1077  =  110 bp
multiple cloning site
MCS
968 .. 1077  =  110 bp
multiple cloning site
AmpR promoter
4943 .. 5047  =  105 bp
AmpR promoter
4943 .. 5047  =  105 bp
EM7 promoter
2184 .. 2231  =  48 bp
synthetic bacterial promoter
EM7 promoter
2184 .. 2231  =  48 bp
synthetic bacterial promoter
tet operator
820 .. 838  =  19 bp
bacterial operator O2 for the tetR and tetA genes
tet operator
820 .. 838  =  19 bp
bacterial operator O2 for the tetR and tetA genes
tet operator
841 .. 859  =  19 bp
bacterial operator O2 for the tetR and tetA genes
tet operator
841 .. 859  =  19 bp
bacterial operator O2 for the tetR and tetA genes
SV40 ori
1987 .. 2122  =  136 bp
SV40 origin of replication
SV40 ori
1987 .. 2122  =  136 bp
SV40 origin of replication
TATA box
804 .. 810  =  7 bp
TATA box
804 .. 810  =  7 bp
Try SnapGene and create your own beautiful maps

Individual Sequences & Maps

SnapGene offers the fastest and easiest way to plan, visualize, and document your molecular biology procedures.

Priced accessibly so that everyone in your lab can have a license.

Learn More...

SnapGene Viewer is a versatile tool for creating and sharing richly annotated sequence files. It opens many common file formats.

Free! Because there should be no barriers to seeing your data.

Learn More...

The map, notes, and annotations on this page and in the sequence/map file are copyrighted material. This material may be used without restriction by academic, nonprofit, and governmental entities, except that the source must be cited as "www.snapgene.com/resources". Commercial entities must contact GSL Biotech LLC for permission and terms of use.

Copyright © 2016 GSL Biotech LLC | Site Map | Privacy | Legal Disclaimers   Subscribe to Our Newsletter