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pIEx/Bac™-3 3C/LIC (linearized)

Linearized insect cell and baculovirus vector for ligation-independent cloning (LIC), encoding a cleavable N-terminal 10xHis tag and a cleavable C-terminal Strep-Tag® II.

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pIEx Bac-3 3C_LIC (linearized) Sequence and MappIEx Bac-3 3C_LIC (linearized).dna
Map and Sequence File   
Sequence Author:  Novagen (EMD Millipore)
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 DraIII (4010) BanII (3936) ScaI (3338) NmeAIII (3006) BpmI (2928) AlwNI (2381) PspFI (2273) BseYI (2269) PciI (1965) PmeI (1845) SgrAI (1557) AgeI (1317) BmgBI (973) AatII (750) ZraI (748) BstXI (4617) NsiI (4634) BbvCI - Bpu10I (4866) BglII (5463) EcoRV (5736) NheI (6103) BmtI (6107) PvuII (6273) BsiWI (6281) EagI (6339) PfoI (6580) NcoI (6694) ATG HRV 3C site End (6752) Start (0) thrombin site BstBI (45) Bsu36I (65) PflFI - Tth111I (318) BlpI (382) SnaBI (469) SwaI (559) pIEx/Bac™-3 3C/LIC 6752 bp
DraIII  (4010)
1 site
C A C N N N G T G G T G N N N C A C

Sticky ends from different DraIII sites may not be compatible.
BanII  (3936)
1 site
G R G C Y C C Y C G R G

Sticky ends from different BanII sites may not be compatible.
ScaI  (3338)
1 site
A G T A C T T C A T G A
NmeAIII  (3006)
1 site
G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19

Efficient cleavage requires at least two copies of the NmeAIII
recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
BpmI  (2928)
1 site
C T G G A G ( N ) 14 N N G A C C T C ( N ) 14

Efficient cleavage requires at least two copies of the BpmI
recognition sequence.
Sticky ends from different BpmI sites may not be compatible.
After cleavage, BpmI can remain bound to DNA and alter its
electrophoretic mobility.
BpmI quickly loses activity at 37°C.
AlwNI  (2381)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
PspFI  (2273)
1 site
C C C A G C G G G T C G
BseYI  (2269)
1 site
C C C A G C G G G T C G

After cleavage, BseYI can remain bound to DNA and alter its
electrophoretic mobility.
PciI  (1965)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
PmeI  (1845)
1 site
G T T T A A A C C A A A T T T G
SgrAI  (1557)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI
recognition sequence.
AgeI  (1317)
1 site
A C C G G T T G G C C A

AgeI quickly loses activity at 37°C, but can be used at 25°C for
long incubations.
BmgBI  (973)
1 site
C A C G T C G T G C A G

This recognition sequence is asymmetric, so ligating blunt ends
generated by BmgBI will not always regenerate a BmgBI site.
AatII  (750)
1 site
G A C G T C C T G C A G
ZraI  (748)
1 site
G A C G T C C T G C A G
BstXI  (4617)
1 site
C C A N N N N N N T G G G G T N N N N N N A C C

Sticky ends from different BstXI sites may not be compatible.
NsiI  (4634)
1 site
A T G C A T T A C G T A
BbvCI  (4866)
1 site
C C T C A G C G G A G T C G
Bpu10I  (4866)
1 site
C C T N A G C G G A N T C G

Efficient cleavage requires at least two copies of the Bpu10I
recognition sequence.
This recognition sequence is asymmetric, so ligating sticky ends
generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
BglII  (5463)
1 site
A G A T C T T C T A G A
EcoRV  (5736)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to
delete a base after cleavage.
NheI  (6103)
1 site
G C T A G C C G A T C G
BmtI  (6107)
1 site
G C T A G C C G A T C G
PvuII  (6273)
1 site
C A G C T G G T C G A C
BsiWI  (6281)
1 site
C G T A C G G C A T G C

BsiWI is typically used at 55°C, but is 50% active at 37°C.
EagI  (6339)
1 site
C G G C C G G C C G G C
PfoI  (6580)
1 site
T C C N G G A A G G N C C T

Sticky ends from different PfoI sites may not be compatible.
NcoI  (6694)
1 site
C C A T G G G G T A C C
End  (6752)
0 sites
Start  (0)
0 sites
BstBI  (45)
1 site
T T C G A A A A G C T T
Bsu36I  (65)
1 site
C C T N A G G G G A N T C C

Sticky ends from different Bsu36I sites may not be compatible.
PflFI  (318)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (318)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
BlpI  (382)
1 site
G C T N A G C C G A N T C G

Sticky ends from different BlpI sites may not be compatible.
SnaBI  (469)
1 site
T A C G T A A T G C A T
SwaI  (559)
1 site
A T T T A A A T T A A A T T T A

SwaI is typically used at 25°C, but is 50% active at 37°C.
baculovirus recombination region (ORF1629)
406 .. 1763  =  1358 bp
contains part of ORF1629
baculovirus recombination region (ORF1629)
406 .. 1763  =  1358 bp
contains part of ORF1629
AmpR
2785 .. 3645  =  861 bp
286 amino acids  =  31.6 kDa
   Segment 2:  
   2785 .. 3576  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and
related antibiotics
AmpR
2785 .. 3645  =  861 bp
286 amino acids  =  31.6 kDa
   Segment 1:  signal sequence  
   3577 .. 3645  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and
related antibiotics
AmpR
2785 .. 3645  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and
related antibiotics
baculovirus recombination region (lef2/ORF603)
4631 .. 5458  =  828 bp
contains ORF603 and part of lef2
baculovirus recombination region (lef2/ORF603)
4631 .. 5458  =  828 bp
contains ORF603 and part of lef2
IE1 promoter
5984 .. 6575  =  592 bp
promoter of the ie1 gene from the baculovirus
Autographa californica
IE1 promoter
5984 .. 6575  =  592 bp
promoter of the ie1 gene from the baculovirus
Autographa californica
ori
2026 .. 2614  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin
of replication
ori
2026 .. 2614  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin
of replication
hr5 enhancer
5498 .. 5980  =  483 bp
baculovirus early transcription enhancer
hr5 enhancer
5498 .. 5980  =  483 bp
baculovirus early transcription enhancer
f1 ori
3777 .. 4232  =  456 bp
f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis
f1 ori
3777 .. 4232  =  456 bp
f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis
IE1 terminator
71 .. 377  =  307 bp
terminator of the ie1 gene from the baculovirus
Autographa californica
IE1 terminator
71 .. 377  =  307 bp
terminator of the ie1 gene from the baculovirus
Autographa californica
p10 promoter
6585 .. 6694  =  110 bp
baculovirus promoter for expression in insect cells
p10 promoter
6585 .. 6694  =  110 bp
baculovirus promoter for expression in insect cells
AmpR promoter
3646 .. 3750  =  105 bp
AmpR promoter
3646 .. 3750  =  105 bp
10xHis
6702 .. 6731  =  30 bp
10 amino acids  =  1.4 kDa
Product: 10xHis affinity tag
10xHis
6702 .. 6731  =  30 bp
10 amino acids  =  1.4 kDa
Product: 10xHis affinity tag
Strep-Tag II
29 .. 52  =  24 bp
8 amino acids  =  1.1 kDa
Product: peptide that binds Strep-Tactin®, an
engineered form of streptavidin
Strep-Tag II
29 .. 52  =  24 bp
8 amino acids  =  1.1 kDa
Product: peptide that binds Strep-Tactin®, an
engineered form of streptavidin
HRV 3C site
6738 .. 6761  =  24 bp
8 amino acids  =  902.1 Da
Product: recognition and cleavage site for human
rhinovirus 3C and PreScission proteases
HRV 3C site
6738 .. 6761  =  24 bp
8 amino acids  =  902.1 Da
Product: recognition and cleavage site for human
rhinovirus 3C and PreScission proteases
thrombin site
5 .. 22  =  18 bp
6 amino acids  =  627.8 Da
Product: thrombin recognition and cleavage site
thrombin site
5 .. 22  =  18 bp
6 amino acids  =  627.8 Da
Product: thrombin recognition and cleavage site
ATG
6696 .. 6698  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
ATG
6696 .. 6698  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
ORF1629
422 .. 1763  =  1342 bp
446 amino acids  =  49.2 kDa
Product: baculovirus capsid-associated protein
required for viral replication
ORF1629
422 .. 1763  =  1342 bp
446 amino acids  =  49.2 kDa
Product: baculovirus capsid-associated protein
required for viral replication
ORF603
4793 .. 5398  =  606 bp
201 amino acids  =  23.6 kDa
Product: baculovirus ORF603 protein
ORF603
4793 .. 5398  =  606 bp
201 amino acids  =  23.6 kDa
Product: baculovirus ORF603 protein
lef2
4631 .. 4755  =  125 bp
40 amino acids  =  4.5 kDa
Product: baculovirus late expression factor 2
lef2
4631 .. 4755  =  125 bp
40 amino acids  =  4.5 kDa
Product: baculovirus late expression factor 2
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