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Plasmid Files

pMT/BiP/V5-His C

Drosophila vector for inducible high-level expression of secreted and tagged proteins. For other reading frames, use pMT/BiP/V5‑His A or pMT/BiP/V5‑His B.

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pMT BiP V5-His C.dna
Map and Sequence File:    Download    Open   
Sequence Author:  Thermo Fisher (Invitrogen)
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EcoO109I (3628) AatII (3574) ZraI (3572) SspI (3456) ScaI (3132) NmeAIII (2800) BpmI (2722) AhdI (2652) AlwNI (2175) PspFI (2067) BseYI (2063) PciI (1759) PfoI (46) BstAPI (185) KasI (235) NarI (236) SfoI (237) PluTI (239) BsgI (640) BmgBI (662) MscI (771) NsiI (863) SfiI (878) BglII (905) BtgI - NcoI - StyI (911) TspMI - XmaI (917) SmaI (919) Acc65I (922) KpnI (926) SpeI (929) EcoRI (946) EcoRV (958) NotI (973) PaeR7I - PspXI - XhoI (979) BstEII (984) BstBI (994) BseRI (1011) MluI (1038) AgeI (1044) PmeI (1074) StuI (1110) Bpu10I (1112) Eco53kI (1116) BanII - SacI (1118) PsiI (1254) HpaI (1274) MfeI (1283) BsaBI * (1375) SalI (1382) AccI (1383) SbfI (1392) BfuAI - BspMI (1395) BspQI - SapI (1643) pMT/BiP/V5-His C 3638 bp
EcoO109I  (3628)
1 site
R G G N C C Y Y C C N G G R

Sticky ends from different EcoO109I sites may not be compatible.
AatII  (3574)
1 site
G A C G T C C T G C A G
ZraI  (3572)
1 site
G A C G T C C T G C A G
SspI  (3456)
1 site
A A T A T T T T A T A A
ScaI  (3132)
1 site
A G T A C T T C A T G A
NmeAIII  (2800)
1 site
G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19

Efficient cleavage requires at least two copies of the NmeAIII recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
BpmI  (2722)
1 site
C T G G A G ( N ) 14 N N G A C C T C ( N ) 14

Efficient cleavage requires at least two copies of the BpmI recognition sequence.
Sticky ends from different BpmI sites may not be compatible.
After cleavage, BpmI can remain bound to DNA and alter its electrophoretic mobility.
BpmI quickly loses activity at 37°C.
AhdI  (2652)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
AlwNI  (2175)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
PspFI  (2067)
1 site
C C C A G C G G G T C G
BseYI  (2063)
1 site
C C C A G C G G G T C G

After cleavage, BseYI can remain bound to DNA and alter its electrophoretic mobility.
PciI  (1759)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
PfoI  (46)
1 site
T C C N G G A A G G N C C T

Sticky ends from different PfoI sites may not be compatible.
BstAPI  (185)
1 site
G C A N N N N N T G C C G T N N N N N A C G

Sticky ends from different BstAPI sites may not be compatible.
KasI  (235)
1 site
G G C G C C C C G C G G
NarI  (236)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the NarI recognition sequence.
SfoI  (237)
1 site
G G C G C C C C G C G G
PluTI  (239)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the PluTI recognition sequence.
BsgI  (640)
1 site
G T G C A G ( N ) 14 N N C A C G T C ( N ) 14

Efficient cleavage requires at least two copies of the BsgI recognition sequence.
Sticky ends from different BsgI sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
BmgBI  (662)
1 site
C A C G T C G T G C A G

This recognition sequence is asymmetric, so ligating blunt ends generated by BmgBI will not always regenerate a BmgBI site.
MscI  (771)
1 site
T G G C C A A C C G G T
NsiI  (863)
1 site
A T G C A T T A C G T A
SfiI  (878)
1 site
G G C C N N N N N G G C C C C G G N N N N N C C G G

Efficient cleavage requires at least two copies of the SfiI recognition sequence.
Sticky ends from different SfiI sites may not be compatible.
BglII  (905)
1 site
A G A T C T T C T A G A
BtgI  (911)
1 site
C C R Y G G G G Y R C C

Sticky ends from different BtgI sites may not be compatible.
NcoI  (911)
1 site
C C A T G G G G T A C C
StyI  (911)
1 site
C C W W G G G G W W C C

Sticky ends from different StyI sites may not be compatible.
TspMI  (917)
1 site
C C C G G G G G G C C C
XmaI  (917)
1 site
C C C G G G G G G C C C

Efficient cleavage requires at least two copies of the XmaI recognition sequence.
Full cleavage with XmaI may require a long incubation.
SmaI  (919)
1 site
C C C G G G G G G C C C

SmaI can be used at 37°C for brief incubations.
Acc65I  (922)
1 site
G G T A C C C C A T G G
KpnI  (926)
1 site
G G T A C C C C A T G G
SpeI  (929)
1 site
A C T A G T T G A T C A
EcoRI  (946)
1 site
G A A T T C C T T A A G
EcoRV  (958)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
NotI  (973)
1 site
G C G G C C G C C G C C G G C G
PaeR7I  (979)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (979)
1 site
V C T C G A G B B G A G C T C V
XhoI  (979)
1 site
C T C G A G G A G C T C
BstEII  (984)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
BstBI  (994)
1 site
T T C G A A A A G C T T
BseRI  (1011)
1 site
G A G G A G ( N ) 8 N N C T C C T C ( N ) 8

Sticky ends from different BseRI sites may not be compatible.
BseRI quickly loses activity at 37°C.
Prolonged incubation with BseRI may lead to degradation of the DNA.
MluI  (1038)
1 site
A C G C G T T G C G C A
AgeI  (1044)
1 site
A C C G G T T G G C C A
PmeI  (1074)
1 site
G T T T A A A C C A A A T T T G
StuI  (1110)
1 site
A G G C C T T C C G G A
Bpu10I  (1112)
1 site
C C T N A G C G G A N T C G

Efficient cleavage requires at least two copies of the Bpu10I recognition sequence.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
Eco53kI  (1116)
1 site
G A G C T C C T C G A G
BanII  (1118)
1 site
G R G C Y C C Y C G R G

Sticky ends from different BanII sites may not be compatible.
SacI  (1118)
1 site
G A G C T C C T C G A G
PsiI  (1254)
1 site
T T A T A A A A T A T T
HpaI  (1274)
1 site
G T T A A C C A A T T G
MfeI  (1283)
1 site
C A A T T G G T T A A C
BsaBI  (1375)
1 site
G A T N N N N A T C C T A N N N N T A G
* Blocked by Dam methylation.
SalI  (1382)
1 site
G T C G A C C A G C T G
AccI  (1383)
1 site
G T M K A C C A K M T G

Efficient cleavage with AccI requires ≥13 bp on each side of the recognition sequence.
Sticky ends from different AccI sites may not be compatible.
SbfI  (1392)
1 site
C C T G C A G G G G A C G T C C
BfuAI  (1395)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BfuAI recognition sequence.
Sticky ends from different BfuAI sites may not be compatible.
BfuAI is typically used at 50°C, but is 50% active at 37°C.
BspMI  (1395)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BspMI recognition sequence.
Sticky ends from different BspMI sites may not be compatible.
BspQI  (1643)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different BspQI sites may not be compatible.
SapI  (1643)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
AmpR
2579 .. 3439  =  861 bp
286 amino acids  =  31.6 kDa
   Segment 2:  
   2579 .. 3370  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
2579 .. 3439  =  861 bp
286 amino acids  =  31.6 kDa
   Segment 1:  signal sequence  
   3371 .. 3439  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
2579 .. 3439  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
ori
1820 .. 2408  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
1820 .. 2408  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
MT promoter
411 .. 833  =  423 bp
Drosophila metallothionein promoter
MT promoter
411 .. 833  =  423 bp
Drosophila metallothionein promoter
SV40 poly(A) signal
1140 .. 1274  =  135 bp
SV40 polyadenylation signal
SV40 poly(A) signal
1140 .. 1274  =  135 bp
SV40 polyadenylation signal
AmpR promoter
3440 .. 3544  =  105 bp
AmpR promoter
3440 .. 3544  =  105 bp
MCS
905 .. 998  =  94 bp
multiple cloning site
MCS
905 .. 998  =  94 bp
multiple cloning site
BiP signal sequence
851 .. 904  =  54 bp
18 amino acids  =  1.8 kDa
Product: Drosophila BiP signal sequence
BiP signal sequence
851 .. 904  =  54 bp
18 amino acids  =  1.8 kDa
Product: Drosophila BiP signal sequence
V5 tag
999 .. 1040  =  42 bp
14 amino acids  =  1.4 kDa
Product: epitope tag from simian virus 5
V5 tag
999 .. 1040  =  42 bp
14 amino acids  =  1.4 kDa
Product: epitope tag from simian virus 5
6xHis
1050 .. 1067  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
6xHis
1050 .. 1067  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
ORF:  563 .. 811  =  249 bp
ORF:  82 amino acids  =  9.2 kDa
ORF:  186 .. 410  =  225 bp
ORF:  74 amino acids  =  8.7 kDa
ORF:  2709 .. 2975  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  369 .. 782  =  414 bp
ORF:  137 amino acids  =  14.6 kDa
ORF:  2579 .. 3439  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
ORF:  466 .. 993  =  528 bp
ORF:  175 amino acids  =  19.7 kDa
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