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Plasmid Files

pEF1α-Tet3G

Vector encoding the Tet-On® 3G transactivator protein, which allows for inducible gene expression.

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pEF1alpha-Tet3G.dna
Map and Sequence File:    Download    Open   
Sequence Author:  Clontech (TaKaRa)
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BstZ17I (7809) AccI (7808) SfiI (7355) AvrII (7301) BmtI (7287) NheI (7283) BclI * (6956) EagI (6891) MscI (6719) RsrII (6282) BstBI (6117) Bsu36I (5922) BspEI * (5791) PflMI (5643) PspXI (4929) AatII (4859) ZraI (4857) ScaI (4417) PvuI (4307) BsaI (3998) BsrGI (47) AleI (182) AgeI (283) BstXI (516) AflII (588) FseI (913) BbvCI (1111) DraIII (1245) EcoRI (1486) XbaI (1498) PmlI (1626) NdeI (2074) PpuMI (2535) BstEII (2631) HindIII (2718) AhdI (3937) pEF1 α- Tet3G 7859 bp
BstZ17I  (7809)
1 site
G T A T A C C A T A T G
AccI  (7808)
1 site
G T M K A C C A K M T G

Efficient cleavage with AccI requires ≥13 bp on each side of the recognition sequence.
Sticky ends from different AccI sites may not be compatible.
SfiI  (7355)
1 site
G G C C N N N N N G G C C C C G G N N N N N C C G G

Efficient cleavage requires at least two copies of the SfiI recognition sequence.
Sticky ends from different SfiI sites may not be compatible.
AvrII  (7301)
1 site
C C T A G G G G A T C C
BmtI  (7287)
1 site
G C T A G C C G A T C G
NheI  (7283)
1 site
G C T A G C C G A T C G
BclI  (6956)
1 site
T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
EagI  (6891)
1 site
C G G C C G G C C G G C
MscI  (6719)
1 site
T G G C C A A C C G G T
RsrII  (6282)
1 site
C G G W C C G G C C W G G C

Efficient cleavage requires at least two copies of the RsrII recognition sequence.
Sticky ends from different RsrII sites may not be compatible.
For full activity, add fresh DTT.
BstBI  (6117)
1 site
T T C G A A A A G C T T
Bsu36I  (5922)
1 site
C C T N A G G G G A N T C C

Sticky ends from different Bsu36I sites may not be compatible.
BspEI  (5791)
1 site
T C C G G A A G G C C T
* Blocked by Dam methylation.
PflMI  (5643)
1 site
C C A N N N N N T G G G G T N N N N N A C C

Sticky ends from different PflMI sites may not be compatible.
PspXI  (4929)
1 site
V C T C G A G B B G A G C T C V
AatII  (4859)
1 site
G A C G T C C T G C A G
ZraI  (4857)
1 site
G A C G T C C T G C A G
ScaI  (4417)
1 site
A G T A C T T C A T G A
PvuI  (4307)
1 site
C G A T C G G C T A G C
BsaI  (3998)
1 site
G G T C T C N C C A G A G N ( N ) 4

Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
BsrGI  (47)
1 site
T G T A C A A C A T G T

BsrGI is typically used at 37°C, but is even more active at 60°C.
AleI  (182)
1 site
C A C N N N N G T G G T G N N N N C A C
AgeI  (283)
1 site
A C C G G T T G G C C A
BstXI  (516)
1 site
C C A N N N N N N T G G G G T N N N N N N A C C

Sticky ends from different BstXI sites may not be compatible.
AflII  (588)
1 site
C T T A A G G A A T T C
FseI  (913)
1 site
G G C C G G C C C C G G C C G G

FseI gradually loses activity when stored at -20°C.
BbvCI  (1111)
1 site
C C T C A G C G G A G T C G
DraIII  (1245)
1 site
C A C N N N G T G G T G N N N C A C

Sticky ends from different DraIII sites may not be compatible.
EcoRI  (1486)
1 site
G A A T T C C T T A A G
XbaI  (1498)
1 site
T C T A G A A G A T C T
PmlI  (1626)
1 site
C A C G T G G T G C A C

PmlI gradually loses activity when stored at -20°C.
NdeI  (2074)
1 site
C A T A T G G T A T A C

Prolonged incubation with NdeI may lead to removal of additional nucleotides.
PpuMI  (2535)
1 site
R G G W C C Y Y C C W G G R

Sticky ends from different PpuMI sites may not be compatible.
BstEII  (2631)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
HindIII  (2718)
1 site
A A G C T T T T C G A A
AhdI  (3937)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
EF-1α promoter
206 .. 1387  =  1182 bp
strong constitutive promoter for human elongation factor EF-1α
EF-1α promoter
206 .. 1387  =  1182 bp
strong constitutive promoter for human elongation factor EF-1α
AmpR
3864 .. 4724  =  861 bp
286 amino acids  =  31.5 kDa
   Segment 2:  
   3864 .. 4655  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
3864 .. 4724  =  861 bp
286 amino acids  =  31.5 kDa
   Segment 1:  signal sequence  
   4656 .. 4724  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
3864 .. 4724  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
NeoR/KanR
6136 .. 6930  =  795 bp
264 amino acids  =  29.0 kDa
Product: aminoglycoside phosphotransferase from Tn5
confers resistance to neomycin, kanamycin, and G418 (Geneticin)
NeoR/KanR
6136 .. 6930  =  795 bp
264 amino acids  =  29.0 kDa
Product: aminoglycoside phosphotransferase from Tn5
confers resistance to neomycin, kanamycin, and G418 (Geneticin)
Tet-On® 3G
1495 .. 2241  =  747 bp
248 amino acids  =  27.7 kDa
Product: modified rtTA protein that binds tightly to promoters containing the tet operator in the presence of doxycycline
Tet-On® 3G
1495 .. 2241  =  747 bp
248 amino acids  =  27.7 kDa
Product: modified rtTA protein that binds tightly to promoters containing the tet operator in the presence of doxycycline
ori
3105 .. 3693  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
3105 .. 3693  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
SV40 promoter
7291 .. 7620  =  330 bp
SV40 enhancer and early promoter
SV40 promoter
7291 .. 7620  =  330 bp
SV40 enhancer and early promoter
SV40 poly(A) signal
2251 .. 2385  =  135 bp
SV40 polyadenylation signal
SV40 poly(A) signal
2251 .. 2385  =  135 bp
SV40 polyadenylation signal
SV40 poly(A) signal
4942 .. 5076  =  135 bp
SV40 polyadenylation signal
SV40 poly(A) signal
4942 .. 5076  =  135 bp
SV40 polyadenylation signal
AmpR promoter
4725 .. 4829  =  105 bp
AmpR promoter
4725 .. 4829  =  105 bp
small t intron
5651 .. 5716  =  66 bp
simian virus 40 (SV40) small t antigen intron
small t intron
5651 .. 5716  =  66 bp
simian virus 40 (SV40) small t antigen intron
EF-1α intron A
436 .. 1378  =  943 bp
intron upstream of the start codon
EF-1α intron A
436 .. 1378  =  943 bp
intron upstream of the start codon
SV40 ori
7305 .. 7440  =  136 bp
SV40 origin of replication
SV40 ori
7305 .. 7440  =  136 bp
SV40 origin of replication
ORF:  844 .. 1077  =  234 bp
ORF:  77 amino acids  =  7.7 kDa
ORF:  1495 .. 2241  =  747 bp
ORF:  248 amino acids  =  27.7 kDa
ORF:  2476 .. 2877  =  402 bp
ORF:  133 amino acids  =  14.7 kDa
ORF:  3994 .. 4260  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  6085 .. 6621  =  537 bp
ORF:  178 amino acids  =  19.8 kDa
ORF:  1652 .. 1954  =  303 bp
ORF:  100 amino acids  =  11.1 kDa
ORF:  2654 .. 3004  =  351 bp
ORF:  116 amino acids  =  13.3 kDa
ORF:  5840 .. 6085  =  246 bp
ORF:  81 amino acids  =  8.4 kDa
ORF:  765 .. 1202  =  438 bp
ORF:  145 amino acids  =  15.9 kDa
ORF:  480 .. 1127  =  648 bp
ORF:  215 amino acids  =  23.7 kDa
ORF:  1947 .. 2402  =  456 bp
ORF:  151 amino acids  =  16.0 kDa
ORF:  3864 .. 4724  =  861 bp
ORF:  286 amino acids  =  31.5 kDa
ORF:  6372 .. 6758  =  387 bp
ORF:  128 amino acids  =  14.6 kDa
ORF:  5099 .. 5572  =  474 bp
ORF:  157 amino acids  =  18.2 kDa
ORF:  5753 .. 6115  =  363 bp
ORF:  120 amino acids  =  13.6 kDa
ORF:  2350 .. 2682  =  333 bp
ORF:  110 amino acids  =  12.0 kDa
ORF:  6136 .. 6930  =  795 bp
ORF:  264 amino acids  =  29.0 kDa
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