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SnapGene and SnapGene Viewer can read .ape files created by ApE. Shown below is an example of an ApE file viewed with the original program and with SnapGene.

ApE file viewed in ApE:

The same file viewed in SnapGene:

Try it yourself. Download the free SnapGene Viewer:

If you have trouble opening an ApE file with SnapGene or SnapGene Viewer, please send us a message and attach the file.