pVL-FH

Baculovirus transfer plasmid for high-level expression of proteins with a C-terminal FLAG®-8xHis cassette.

Sequence Author: AB Vector

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NdeI (9509) ScaI (8818) AlwNI (7861) PspFI (7753) BseYI (7749) BspQI - SapI (7329) FspAI (6412) SgrDI (6259) SgrAI (5990) SnaBI (4902) KpnI (4722) PasI (486) PacI (583) XcmI (746) BtgI (868) SacII (871) BstEII (923) PspOMI (1395) ApaI - BanII (1399) PaeR7I - PspXI - XhoI (1901) SphI (2135) BclI * (2232) BbvCI - Bpu10I (3405) NgoMIV (3770) NaeI (3772) EcoRV (4000) BglII (4134) PstI (4142) EagI - NotI (4144) EcoRI (4155) TspMI - XmaI (4160) SmaI (4162) BamHI (4164) XbaI (4172) AvrII (4246) KflI - PpuMI (4271) Acc65I (4718) pVL-FH 9723 bp
NdeI  (9509)
1 site
C A T A T G G T A T A C

Prolonged incubation with NdeI may lead to removal of additional nucleotides.
ScaI  (8818)
1 site
A G T A C T T C A T G A
AlwNI  (7861)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
PspFI  (7753)
1 site
C C C A G C G G G T C G
BseYI  (7749)
1 site
C C C A G C G G G T C G

After cleavage, BseYI can remain bound to DNA and alter its electrophoretic mobility.
BspQI  (7329)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different BspQI sites may not be compatible.
SapI  (7329)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
FspAI  (6412)
1 site
R T G C G C A Y Y A C G C G T R
SgrDI  (6259)
1 site
C G T C G A C G G C A G C T G C
SgrAI  (5990)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
SnaBI  (4902)
1 site
T A C G T A A T G C A T
KpnI  (4722)
1 site
G G T A C C C C A T G G
PasI  (486)
1 site
C C C W G G G G G G W C C C

Sticky ends from different PasI sites may not be compatible.
PacI  (583)
1 site
T T A A T T A A A A T T A A T T
XcmI  (746)
1 site
C C A N N N N N N N N N T G G G G T N N N N N N N N N A C C

The 1-base overhangs produced by XcmI may be hard to ligate.
Sticky ends from different XcmI sites may not be compatible.
BtgI  (868)
1 site
C C R Y G G G G Y R C C

Sticky ends from different BtgI sites may not be compatible.
SacII  (871)
1 site
C C G C G G G G C G C C

Efficient cleavage requires at least two copies of the SacII recognition sequence.
BstEII  (923)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
PspOMI  (1395)
1 site
G G G C C C C C C G G G
ApaI  (1399)
1 site
G G G C C C C C C G G G

ApaI can be used between 25°C and 37°C.
BanII  (1399)
1 site
G R G C Y C C Y C G R G

Sticky ends from different BanII sites may not be compatible.
PaeR7I  (1901)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (1901)
1 site
V C T C G A G B B G A G C T C V
XhoI  (1901)
1 site
C T C G A G G A G C T C
SphI  (2135)
1 site
G C A T G C C G T A C G
BclI  (2232)
1 site
T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
BbvCI  (3405)
1 site
C C T C A G C G G A G T C G
Bpu10I  (3405)
1 site
C C T N A G C G G A N T C G

Cleavage may be enhanced when more than one copy of the Bpu10I recognition sequence is present.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
NgoMIV  (3770)
1 site
G C C G G C C G G C C G

Efficient cleavage requires at least two copies of the NgoMIV recognition sequence.
NaeI  (3772)
1 site
G C C G G C C G G C C G

Efficient cleavage requires at least two copies of the NaeI recognition sequence.
EcoRV  (4000)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
BglII  (4134)
1 site
A G A T C T T C T A G A
PstI  (4142)
1 site
C T G C A G G A C G T C
EagI  (4144)
1 site
C G G C C G G C C G G C
NotI  (4144)
1 site
G C G G C C G C C G C C G G C G
EcoRI  (4155)
1 site
G A A T T C C T T A A G
TspMI  (4160)
1 site
C C C G G G G G G C C C
XmaI  (4160)
1 site
C C C G G G G G G C C C

Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
SmaI  (4162)
1 site
C C C G G G G G G C C C

SmaI can be used at 37°C for brief incubations.
BamHI  (4164)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
XbaI  (4172)
1 site
T C T A G A A G A T C T
AvrII  (4246)
1 site
C C T A G G G G A T C C
KflI  (4271)
1 site
G G G W C C C C C C W G G G

Sticky ends from different KflI sites may not be compatible.
PpuMI  (4271)
1 site
R G G W C C Y Y C C W G G R

Sticky ends from different PpuMI sites may not be compatible.
Acc65I  (4718)
1 site
G G T A C C C C A T G G
AmpR
8265 .. 9125  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   8265 .. 9056  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
8265 .. 9125  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   9057 .. 9125  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
8265 .. 9125  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
baculovirus recombination region (lef2/ORF603)
3170 .. 3997  =  828 bp
contains ORF603 and part of lef2
baculovirus recombination region (lef2/ORF603)
3170 .. 3997  =  828 bp
contains ORF603 and part of lef2
baculovirus recombination region (ORF1629)
4738 .. 5443  =  706 bp
contains part of ORF1629
baculovirus recombination region (ORF1629)
4738 .. 5443  =  706 bp
contains part of ORF1629
ori
7506 .. 8094  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
7506 .. 8094  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
MCS
4134 .. 4276  =  143 bp
multiple cloning site
MCS
4134 .. 4276  =  143 bp
multiple cloning site
AmpR promoter
9126 .. 9230  =  105 bp
AmpR promoter
9126 .. 9230  =  105 bp
polyhedrin promoter
4001 .. 4092  =  92 bp
promoter for the baculov