pAcSecG2T

Baculovirus transfer vector for expressing secreted N-terminally GST-tagged proteins with a thrombin cleavage site, for use with the BD BaculoGold™ system.

Sequence Author: BD Biosciences

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PspFI (7981) BseYI (7977) AlwNI (7872) BpmI (7324) NmeAIII (7246) PfoI (6354) DraIII (5997) BanII (5923) EagI (5294) FspAI (4617) SgrDI (4464) SphI (234) BstXI (1255) BbvCI - Bpu10I (1504) BseRI (1620) baculovirus recombination region (lef2/ORF603) EcoRV (2099) SpeI (2205) StyI (2223) EcoNI (2330) BamHI (2992) TspMI - XmaI (2997) SmaI (2999) EcoRI (3002) SnaBI (3097) AgeI (3945) SgrAI (4185) pAcSecG2T 8813 bp
PspFI  (7981)
1 site
C C C A G C G G G T C G
BseYI  (7977)
1 site
C C C A G C G G G T C G

After cleavage, BseYI can remain bound to DNA and alter its electrophoretic mobility.
AlwNI  (7872)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
BpmI  (7324)
1 site
C T G G A G ( N ) 14 N N G A C C T C ( N ) 14

Efficient cleavage requires at least two copies of the BpmI recognition sequence.
Sticky ends from different BpmI sites may not be compatible.
After cleavage, BpmI can remain bound to DNA and alter its electrophoretic mobility.
BpmI quickly loses activity at 37°C.
NmeAIII  (7246)
1 site
G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19

Efficient cleavage requires at least two copies of the NmeAIII recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
PfoI  (6354)
1 site
T C C N G G A A G G N C C T

Sticky ends from different PfoI sites may not be compatible.
DraIII  (5997)
1 site
C A C N N N G T G G T G N N N C A C

Sticky ends from different DraIII sites may not be compatible.
BanII  (5923)
1 site
G R G C Y C C Y C G R G

Sticky ends from different BanII sites may not be compatible.
EagI  (5294)
1 site
C G G C C G G C C G G C
FspAI  (4617)
1 site
R T G C G C A Y Y A C G C G T R
SgrDI  (4464)
1 site
C G T C G A C G G C A G C T G C
SphI  (234)
1 site
G C A T G C C G T A C G
BstXI  (1255)
1 site
C C A N N N N N N T G G G G T N N N N N N A C C

Sticky ends from different BstXI sites may not be compatible.
BbvCI  (1504)
1 site
C C T C A G C G G A G T C G
Bpu10I  (1504)
1 site
C C T N A G C G G A N T C G

Cleavage may be enhanced when more than one copy of the Bpu10I recognition sequence is present.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
BseRI  (1620)
1 site
G A G G A G ( N ) 8 N N C T C C T C ( N ) 8

Sticky ends from different BseRI sites may not be compatible.
BseRI quickly loses activity at 37°C.
Prolonged incubation with BseRI may lead to degradation of the DNA.
EcoRV  (2099)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
SpeI  (2205)
1 site
A C T A G T T G A T C A
StyI  (2223)
1 site
C C W W G G G G W W C C

Sticky ends from different StyI sites may not be compatible.
EcoNI  (2330)
1 site
C C T N N N N N A G G G G A N N N N N T C C

The 1-base overhangs produced by EcoNI may be hard to ligate.
Sticky ends from different EcoNI sites may not be compatible.
BamHI  (2992)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
TspMI  (2997)
1 site
C C C G G G G G G C C C
XmaI  (2997)
1 site
C C C G G G G G G C C C

Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
SmaI  (2999)
1 site
C C C G G G G G G C C C

SmaI can be used at 37°C for brief incubations.
EcoRI  (3002)
1 site
G A A T T C C T T A A G
SnaBI  (3097)
1 site
T A C G T A A T G C A T
AgeI  (3945)
1 site
A C C G G T T G G C C A
SgrAI  (4185)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
baculovirus recombination region (ORF1629)
3034 .. 4391  =  1358 bp
contains part of ORF1629
baculovirus recombination region (ORF1629)
3034 .. 4391  =  1358 bp
contains part of ORF1629
AmpR
6606 .. 7466  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   6606 .. 6674  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
6606 .. 7466  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   6675 .. 7466  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
6606 .. 7466  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
baculovirus recombination region (lef2/ORF603)
1269 .. 2096  =  828 bp
contains ORF603 and part of lef2
baculovirus recombination region (lef2/ORF603)
1269 .. 2096  =  828 bp
contains ORF603 and part of lef2
GP64 signal sequence
2254 .. 2313  =  60 bp
20 amino acids  =  2.0 kDa
Product: signal sequence from the baculovirus envelope glycoprotein GP64
GP64 signal sequence
2254 .. 2313  =  60 bp
20 amino acids  =  2.0 kDa
Product: signal sequence from the baculovirus envelope glycoprotein GP64
GST
2320 .. 2973  =  654 bp
218 amino acids  =  25.5 kDa
Product: glutathione S-transferase from Schistosoma japonicum
GST
2320 .. 2973  =  654 bp
218 amino acids  =  25.5 kDa
Product: glutathione S-transferase from Schistosoma japonicum
thrombin site
2980 .. 2997  =  18 bp
6 amino acids  =  627.7 Da
Product: thrombin recognition and cleavage site
thrombin site
2980 .. 2997  =  18 bp
6 amino acids  =  627.7 Da
Product: thrombin recognition and cleavage site
ori
7637 .. 8225  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
7637 .. 8225  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
f1 ori
5764 .. 6219  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
5764 .. 6219  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
AmpR promoter
6501 .. 6605  =  105 bp
AmpR promoter
6501 .. 6605  =  105 bp
polyhedrin promoter
2100 .. 2191  =  92 bp
promoter for the baculovirus polyhedrin gene
polyhedrin promoter
2100 .. 2191  =  92 bp
promoter for the baculovirus polyhedrin gene
ORF1629
3050 .. 4391  =  1342 bp
446 amino acids  =  49.2 kDa
Product: baculovirus capsid-associated protein
required for viral replication
ORF1629
3050 .. 4391  =  1342 bp
446 amino acids  =  49.2 kDa
Product: baculovirus capsid-associated protein
required for viral replication
ORF603
1431 .. 2036  =  606 bp
201 amino acids  =  23.6 kDa
Product: baculovirus ORF603 protein
ORF603
1431 .. 2036  =  606 bp
201 amino acids  =  23.6 kDa
Product: baculovirus ORF603 protein
lef2
1269 .. 1393  =  125 bp
40 amino acids  =  4.5 kDa
Product: baculovirus late expression factor 2
lef2
1269 .. 1393  =  125 bp
40 amino acids  =  4.5 kDa
Product: baculovirus late expression factor 2
MCS
2992 .. 3007  =  16 bp
multiple cloning site
MCS
2992 .. 3007  =  16 bp
multiple cloning site
ORF:  451 .. 780  =  330 bp
ORF:  109 amino acids  =  12.4 kDa
ORF:  2200 .. 3018  =  819 bp
ORF:  272 amino acids  =  31.3 kDa
ORF:  4684 .. 5274  =  591 bp
ORF:  196 amino acids  =  22.9 kDa
ORF:  5482 .. 5787  =  306 bp
ORF:  101 amino acids  =  11.7 kDa
ORF:  761 .. 1393  =  633 bp
ORF:  210 amino acids  =  23.9 kDa
ORF:  6606 .. 7466  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
ORF:  8633 .. 422  =  603 bp
ORF:  200 amino acids  =  ~23.4 kDa
ORF:  1431 .. 2036  =  606 bp
ORF:  201 amino acids  =  23.6 kDa
ORF:  4347 .. 4685  =  339 bp
ORF:  112 amino acids  =  13.3 kDa
ORF:  5427 .. 5744  =  318 bp
ORF:  105 amino acids  =  12.3 kDa
ORF:  1475 .. 1705  =  231 bp
ORF:  76 amino acids  =  9.3 kDa
ORF:  3050 .. 4303  =  1254 bp
ORF:  417 amino acids  =  46.0 kDa
ORF:  7070 .. 7336  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
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