pIEx Bac-1

Insect cell and baculovirus vector encoding a cleavable N-terminal Strep-Tag® II and a C-terminal 10xHis tag.

Sequence Author: MilliporeSigma (Novagen)

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ScaI (5832) NmeAIII (5500) AlwNI (4875) PspFI (4767) BseYI (4763) PciI (4459) PmeI (4339) SgrAI (4051) AleI (4042) AgeI (3811) BmgBI (3467) BstXI (315) NsiI (332) BbvCI - Bpu10I (564) BglII (1161) EcoRV (1434) NheI (1801) BmtI (1805) PvuII (1971) BsiWI (1979) PfoI (2278) EcoO109I - PpuMI (2282) BtgI - NcoI (2392) ATG Strep-Tag II BstBI (2419) Acc65I (2447) KpnI (2451) BamHI (2453) PshAI (2463) HindIII (2472) NotI (2479) Eco53kI (2490) BseRI - SacI (2492) Bsu36I (2559) IE1 terminator PflFI - Tth111I (2812) BlpI (2876) SnaBI (2963) SwaI (3053) pIEx/Bac™-1 6796 bp
ScaI  (5832)
1 site
A G T A C T T C A T G A
NmeAIII  (5500)
1 site
G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19

Efficient cleavage requires at least two copies of the NmeAIII recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
AlwNI  (4875)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
PspFI  (4767)
1 site
C C C A G C G G G T C G
BseYI  (4763)
1 site
C C C A G C G G G T C G

After cleavage, BseYI can remain bound to DNA and alter its electrophoretic mobility.
PciI  (4459)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
PmeI  (4339)
1 site
G T T T A A A C C A A A T T T G
SgrAI  (4051)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
AleI  (4042)
1 site
C A C N N N N G T G G T G N N N N C A C
AgeI  (3811)
1 site
A C C G G T T G G C C A
BmgBI  (3467)
1 site
C A C G T C G T G C A G

This recognition sequence is asymmetric, so ligating blunt ends generated by BmgBI will not always regenerate a BmgBI site.
BstXI  (315)
1 site
C C A N N N N N N T G G G G T N N N N N N A C C

Sticky ends from different BstXI sites may not be compatible.
NsiI  (332)
1 site
A T G C A T T A C G T A
BbvCI  (564)
1 site
C C T C A G C G G A G T C G
Bpu10I  (564)
1 site
C C T N A G C G G A N T C G

Cleavage may be enhanced when more than one copy of the Bpu10I recognition sequence is present.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
BglII  (1161)
1 site
A G A T C T T C T A G A
EcoRV  (1434)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
NheI  (1801)
1 site
G C T A G C C G A T C G
BmtI  (1805)
1 site
G C T A G C C G A T C G
PvuII  (1971)
1 site
C A G C T G G T C G A C
BsiWI  (1979)
1 site
C G T A C G G C A T G C

BsiWI is typically used at 55°C, but is 50% active at 37°C.
PfoI  (2278)
1 site
T C C N G G A A G G N C C T

Sticky ends from different PfoI sites may not be compatible.
EcoO109I  (2282)
1 site
R G G N C C Y Y C C N G G R

Sticky ends from different EcoO109I sites may not be compatible.
PpuMI  (2282)
1 site
R G G W C C Y Y C C W G G R

Sticky ends from different PpuMI sites may not be compatible.
BtgI  (2392)
1 site
C C R Y G G G G Y R C C

Sticky ends from different BtgI sites may not be compatible.
NcoI  (2392)
1 site
C C A T G G G G T A C C
BstBI  (2419)
1 site
T T C G A A A A G C T T
Acc65I  (2447)
1 site
G G T A C C C C A T G G
KpnI  (2451)
1 site
G G T A C C C C A T G G
BamHI  (2453)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
PshAI  (2463)
1 site
G A C N N N N G T C C T G N N N N C A G

PshAI quickly loses activity at 37°C, but can be used at 25°C for long incubations.
HindIII  (2472)
1 site
A A G C T T T T C G A A
NotI  (2479)
1 site
G C G G C C G C C G C C G G C G
Eco53kI  (2490)
1 site
G A G C T C C T C G A G
BseRI  (2492)
1 site
G A G G A G ( N ) 8 N N C T C C T C ( N ) 8

Sticky ends from different BseRI sites may not be compatible.
BseRI quickly loses activity at 37°C.
Prolonged incubation with BseRI may lead to degradation of the DNA.
SacI  (2492)
1 site
G A G C T C C T C G A G
Bsu36I  (2559)
1 site
C C T N A G G G G A N T C C

Sticky ends from different Bsu36I sites may not be compatible.
PflFI  (2812)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (2812)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
BlpI  (2876)
1 site
G C T N A G C C G A N T C G

Sticky ends from different BlpI sites may not be compatible.
SnaBI  (2963)
1 site
T A C G T A A T G C A T
SwaI  (3053)
1 site
A T T T A A A T T A A A T T T A

SwaI is typically used at 25°C, but is 50% active at 37°C.
baculovirus recombination region (ORF1629)
2900 .. 4257  =  1358 bp
contains part of ORF1629
baculovirus recombination region (ORF1629)
2900 .. 4257  =  1358 bp
contains part of ORF1629
AmpR
5279 .. 6139  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   5279 .. 6070  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
5279 .. 6139  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   6071 .. 6139  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
5279 .. 6139  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
baculovirus recombination region (lef2/ORF603)
329 .. 1156  =  828 bp
contains ORF603 and part of lef2
baculovirus recombination region (lef2/ORF603)
329 .. 1156  =  828 bp
contains ORF603 and part of lef2
IE1 promoter
1682 .. 2273  =  592 bp
promoter of the ie1 gene from the baculovirus Autographa californica
IE1 promoter
1682 .. 2273  =  592 bp
promoter of the ie1 gene from the baculovirus Autographa californica
ori
4520 .. 5108  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
4520 .. 5108  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
hr5 enhancer
1196 .. 1678  =  483 bp
baculovirus early transcription enhancer
hr5 enhancer
1196 .. 1678  =  483 bp
baculovirus early transcription enhancer
f1 ori
6271 .. 6726  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
6271 .. 6726  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
IE1 terminator
2565 .. 2871  =  307 bp
terminator of the ie1 gene from the baculovirus Autographa californica
IE1 terminator
2565 .. 2871  =  307 bp
terminator of the ie1 gene from the baculovirus Autographa californica
ATG
2394 .. 2396  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
ATG
2394 .. 2396  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
Strep-Tag II
2403 .. 2426  =  24 bp
8 amino acids  =  1.1 kDa
Product: peptide that binds Strep-Tactin®, an engineered form of streptavidin
Strep-Tag II
2403 .. 2426  =  24 bp
8 amino acids  =  1.1 kDa
Product: peptide that binds Strep-Tactin®, an engineered form of streptavidin
enterokinase site
2433 .. 2447  =  15 bp
5 amino acids  =  606.5 Da
Product: enterokinase recognition and cleavage site
enterokinase site
2433 .. 2447  =  15 bp
5 amino acids  =  606.5 Da
Product: enterokinase recognition and cleavage site
10xHis
2517 .. 2546  =  30 bp
10 amino acids  =  1.4 kDa
Product: 10xHis affinity tag
10xHis
2517 .. 2546  =  30 bp
10 amino acids  =  1.4 kDa
Product: 10xHis affinity tag
p10 promoter
2283 .. 2392  =  110 bp
baculovirus promoter for expression in insect cells
p10 promoter
2283 .. 2392  =  110 bp
baculovirus promoter for expression in insect cells
AmpR promoter
6140 .. 6244  =  105 bp
AmpR promoter
6140 .. 6244  =  105 bp
ORF1629
2916 .. 4257  =  1342 bp
446 amino acids  =  49.2 kDa
Product: baculovirus capsid-associated protein
required for viral replication
ORF1629
2916 .. 4257  =  1342 bp
446 amino acids  =  49.2 kDa
Product: baculovirus capsid-associated protein
required for viral replication
ORF603
491 .. 1096  =  606 bp
201 amino acids  =  23.6 kDa
Product: baculovirus ORF603 protein
ORF603
491 .. 1096  =  606 bp
201 amino acids  =  23.6 kDa
Product: baculovirus ORF603 protein
lef2
329 .. 453  =  125 bp
40 amino acids  =  4.5 kDa
Product: baculovirus late expression factor 2
lef2
329 .. 453  =  125 bp
40 amino acids  =  4.5 kDa
Product: baculovirus late expression factor 2
MCS
2447 .. 2506  =  60 bp
multiple cloning site
MCS
2447 .. 2506  =  60 bp
multiple cloning site
ORF:  73 .. 453  =  381 bp
ORF:  126 amino acids  =  14.4 kDa
ORF:  5409 .. 5675  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  491 .. 1096  =  606 bp
ORF:  201 amino acids  =  23.6 kDa
ORF:  5279 .. 6139  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
ORF:  535 .. 765  =  231 bp
ORF:  76 amino acids  =  9.2 kDa
ORF:  1647 .. 2213  =  567 bp
ORF:  188 amino acids  =  21.5 kDa
ORF:  2916 .. 4169  =  1254 bp
ORF:  417 amino acids  =  46.0 kDa
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