pEASY-Blunt E2 (linearized)

Prokaryotic expression vector for cloning blunt-ended PCR products and adding a C-terminal 6xHis tag.

Sequence Author: TransBionovo (TransGen Biotech)

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BlpI (92) AvaI - BsoBI - PaeR7I - PspXI - XhoI (13) Start (0) End (5394) ATG NdeI (5378) XbaI (5338) T7 promoter BglII (5272) SgrAI (5231) SphI (5083) EcoNI (5018) PflMI (4975) BstAPI (4874) MluI (4550) BclI * (4536) BstEII (4368) ApaI (4347) PspOMI (4343) BssHII (4139) EcoRV (4104) HincII - HpaI (4048) PshAI (3709) FspAI (3472) PpuMI (3444) Bpu10I (3344) StyI (114) DraIII (420) PsiI (545) ScaI (1080) PvuI (1192) PstI (1319) BsaI (1495) AhdI (1561) AlwNI (2040) PciI (2449) BspQI - SapI (2566) AccI (2681) BstZ17I (2682) PflFI - Tth111I (2707) pEASY®-Blunt E2 5394 bp
BlpI  (92)
1 site
G C T N A G C C G A N T C G

Sticky ends from different BlpI sites may not be compatible.
AvaI  (13)
1 site
C Y C G R G G R G C Y C

Sticky ends from different AvaI sites may not be compatible.
BsoBI  (13)
1 site
C Y C G R G G R G C Y C

Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
PaeR7I  (13)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (13)
1 site
V C T C G A G B B G A G C T C V
XhoI  (13)
1 site
C T C G A G G A G C T C
Start  (0)
0 sites
End  (5394)
0 sites
NdeI  (5378)
1 site
C A T A T G G T A T A C

Prolonged incubation with NdeI may lead to removal of additional nucleotides.
XbaI  (5338)
1 site
T C T A G A A G A T C T
BglII  (5272)
1 site
A G A T C T T C T A G A
SgrAI  (5231)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
SphI  (5083)
1 site
G C A T G C C G T A C G
EcoNI  (5018)
1 site
C C T N N N N N A G G G G A N N N N N T C C

The 1-base overhangs produced by EcoNI may be hard to ligate.
Sticky ends from different EcoNI sites may not be compatible.
PflMI  (4975)
1 site
C C A N N N N N T G G G G T N N N N N A C C

Sticky ends from different PflMI sites may not be compatible.
BstAPI  (4874)
1 site
G C A N N N N N T G C C G T N N N N N A C G

Sticky ends from different BstAPI sites may not be compatible.
MluI  (4550)
1 site
A C G C G T T G C G C A
BclI  (4536)
1 site
T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
BstEII  (4368)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
ApaI  (4347)
1 site
G G G C C C C C C G G G

ApaI can be used between 25°C and 37°C.
PspOMI  (4343)
1 site
G G G C C C C C C G G G
BssHII  (4139)
1 site
G C G C G C C G C G C G

BssHII is typically used at 50°C, but is 75% active at 37°C.
EcoRV  (4104)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
HincII  (4048)
1 site
G T Y R A C C A R Y T G
HpaI  (4048)
1 site
G T T A A C C A A T T G
PshAI  (3709)
1 site
G A C N N N N G T C C T G N N N N C A G

PshAI quickly loses activity at 37°C, but can be used at 25°C for long incubations.
FspAI  (3472)
1 site
R T G C G C A Y Y A C G C G T R
PpuMI  (3444)
1 site
R G G W C C Y Y C C W G G R

Sticky ends from different PpuMI sites may not be compatible.
Bpu10I  (3344)
1 site
C C T N A G C G G A N T C G

Cleavage may be enhanced when more than one copy of the Bpu10I recognition sequence is present.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
StyI  (114)
1 site
C C W W G G G G W W C C

Sticky ends from different StyI sites may not be compatible.
DraIII  (420)
1 site
C A C N N N G T G G T G N N N C A C

Sticky ends from different DraIII sites may not be compatible.
PsiI  (545)
1 site
T T A T A A A A T A T T
ScaI  (1080)
1 site
A G T A C T T C A T G A
PvuI  (1192)
1 site
C G A T C G G C T A G C
PstI  (1319)
1 site
C T G C A G G A C G T C
BsaI  (1495)
1 site
G G T C T C N C C A G A G N ( N ) 4

Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
AhdI  (1561)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
AlwNI  (2040)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
PciI  (2449)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
BspQI  (2566)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different BspQI sites may not be compatible.
SapI  (2566)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
AccI  (2681)
1 site
G T M K A C C A K M T G

Efficient cleavage with AccI requires ≥13 bp on each side of the recognition sequence.
Sticky ends from different AccI sites may not be compatible.
BstZ17I  (2682)
1 site
G T A T A C C A T A T G
PflFI  (2707)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (2707)
1 site
G A C N N N G T C C T G N N N C A G

The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
lacI
3823 .. 4905  =  1083 bp
360 amino acids  =  38.6 kDa
Product: lac repressor
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
lacI
3823 .. 4905  =  1083 bp
360 amino acids  =  38.6 kDa
Product: lac repressor
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
AmpR
774 .. 1634  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
   Segment 1:  signal sequence  
   774 .. 842  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
774 .. 1634  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
   Segment 2:  
   843 .. 1634  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
774 .. 1634  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
ori
1805 .. 2393  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
1805 .. 2393  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
f1 ori
187 .. 642  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
187 .. 642  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
rop
2823 .. 3014  =  192 bp
63 amino acids  =  7.2 kDa
Product: Rop protein, which maintains plasmids at low copy number
rop
2823 .. 3014  =  192 bp
63 amino acids  =  7.2 kDa
Product: Rop protein, which maintains plasmids at low copy number
AmpR promoter
669 .. 773  =  105 bp
AmpR promoter
669 .. 773  =  105 bp
lacI promoter
4906 .. 4983  =  78 bp
lacI promoter
4906 .. 4983  =  78 bp
T7 terminator
103 .. 150  =  48 bp
transcription terminator for bacteriophage T7 RNA polymerase
T7 terminator
103 .. 150  =  48 bp
transcription terminator for bacteriophage T7 RNA polymerase
lac operator
5311 .. 5335  =  25 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
lac operator
5311 .. 5335  =  25 bp
The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-β-D-thiogalactopyranoside (IPTG).
RBS
5350 .. 5372  =  23 bp
efficient ribosome binding site from bacteriophage T7 gene 10 (Olins and Rangwala, 1989)
RBS
5350 .. 5372  =  23 bp
efficient ribosome binding site from bacteriophage T7 gene 10 (Olins and Rangwala, 1989)
T7 promoter
5292 .. 5310  =  19 bp
promoter for bacteriophage T7 RNA polymerase
T7 promoter
5292 .. 5310  =  19 bp
promoter for bacteriophage T7 RNA polymerase
6xHis
19 .. 36  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
6xHis
19 .. 36  =  18 bp
6 amino acids  =  840.9 Da
Product: 6xHis affinity tag
ATG
5380 .. 5382  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
ATG
5380 .. 5382  =  3 bp
1 amino acid  =  149.2 Da
Product: start codon
ORF:  3046 .. 3414  =  369 bp
ORF:  122 amino acids  =  14.2 kDa
ORF:  5081 .. 5320  =  240 bp
ORF:  79 amino acids  =  8.0 kDa
ORF:  774 .. 1634  =  861 bp
ORF:  286 amino acids  =  31.5 kDa
ORF:  3789 .. 4040  =  252 bp
ORF:  83 amino acids  =  9.1 kDa
ORF:  4944 .. 5207  =  264 bp
ORF:  87 amino acids  =  9.5 kDa
ORF:  3823 .. 4782  =  960 bp
ORF:  319 amino acids  =  34.1 kDa
ORF:  5152 .. 5394  =  243 bp
ORF:  80 amino acids  =  8.5 kDa  (no start codon)
ORF:  2823 .. 3047  =  225 bp
ORF:  74 amino acids  =  8.5 kDa
ORF:  3411 .. 3767  =  357 bp
ORF:  118 amino acids  =  13.0 kDa
ORF:  1238 .. 1504  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  3803 .. 4066  =  264 bp
ORF:  87 amino acids  =  8.9 kDa
ORF:  4655 .. 5155  =  501 bp
ORF:  166 amino acids  =  17.5 kDa
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