pHY300PLK

Escherichia coli-Bacillus subtilis shuttle vector with ampicillin and tetracycline resistance genes.

Sequence Author: TaKaRa

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HindIII (1) AgeI (4709) AlwNI (4523) BstBI (4384) BanI (4123) AhdI (4076) BglI (3958) NmeAIII (3929) FspI (3853) PvuI (3707) BaeGI - Bme1580I * (3408) ApaLI (3404) BsrBI (3234) SacII (3186) AatII (3157) ZraI (3155) AflII (3094) XbaI (6) BglII (11) SalI (21) BamHI (27) AvaI - BsoBI - TspMI - XmaI (32) SmaI (34) EcoRI (37) BstEII (136) AflIII (501) EcoO109I - PpuMI (512) PfoI (724) EcoRV (876) PflMI (1007) BspDI * - ClaI * (1038) BssHII (1087) BsgI (1110) MscI (1180) HpaI (1297) PaqCI (1322) BsmBI - Esp3I (1364) NsiI (2137) BsmI (2381) pHY300PLK 4870 bp
HindIII  (1)
1 site
A A G C T T T T C G A A
AgeI  (4709)
1 site
A C C G G T T G G C C A
AlwNI  (4523)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
BstBI  (4384)
1 site
T T C G A A A A G C T T
BanI  (4123)
1 site
G G Y R C C C C R Y G G

Sticky ends from different BanI sites may not be compatible.
AhdI  (4076)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
BglI  (3958)
1 site
G C C N N N N N G G C C G G N N N N N C C G

Sticky ends from different BglI sites may not be compatible.
NmeAIII  (3929)
1 site
G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19

Efficient cleavage requires at least two copies of the NmeAIII recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
FspI  (3853)
1 site
T G C G C A A C G C G T
PvuI  (3707)
1 site
C G A T C G G C T A G C
BaeGI  (3408)
1 site
G K G C M C C M C G K G

Sticky ends from different BaeGI sites may not be compatible.
Bme1580I  (3408)
1 site
G K G C M C C M C G K G
* Blocked by EcoKI methylation.
Sticky ends from different Bme1580I sites may not be compatible.
ApaLI  (3404)
1 site
G T G C A C C A C G T G
BsrBI  (3234)
1 site
C C G C T C G G C G A G

This recognition sequence is asymmetric, so ligating blunt ends generated by BsrBI will not always regenerate a BsrBI site.
BsrBI is typically used at 37°C, but can be used at temperatures up to 50°C.
SacII  (3186)
1 site
C C G C G G G G C G C C

Efficient cleavage requires at least two copies of the SacII recognition sequence.
AatII  (3157)
1 site
G A C G T C C T G C A G
ZraI  (3155)
1 site
G A C G T C C T G C A G
AflII  (3094)
1 site
C T T A A G G A A T T C
XbaI  (6)
1 site
T C T A G A A G A T C T
BglII  (11)
1 site
A G A T C T T C T A G A
SalI  (21)
1 site
G T C G A C C A G C T G
BamHI  (27)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
AvaI  (32)
1 site
C Y C G R G G R G C Y C

Sticky ends from different AvaI sites may not be compatible.
BsoBI  (32)
1 site
C Y C G R G G R G C Y C

Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
TspMI  (32)
1 site
C C C G G G G G G C C C
XmaI  (32)
1 site
C C C G G G G G G C C C

Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
SmaI  (34)
1 site
C C C G G G G G G C C C

SmaI can be used at 37°C for brief incubations.
EcoRI  (37)
1 site
G A A T T C C T T A A G
BstEII  (136)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
AflIII  (501)
1 site
A C R Y G T T G Y R C A

Sticky ends from different AflIII sites may not be compatible.
EcoO109I  (512)
1 site
R G G N C C Y Y C C N G G R

Sticky ends from different EcoO109I sites may not be compatible.
PpuMI  (512)
1 site
R G G W C C Y Y C C W G G R

Sticky ends from different PpuMI sites may not be compatible.
PfoI  (724)
1 site
T C C N G G A A G G N C C T

Sticky ends from different PfoI sites may not be compatible.
EcoRV  (876)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
PflMI  (1007)
1 site
C C A N N N N N T G G G G T N N N N N A C C

Sticky ends from different PflMI sites may not be compatible.
BspDI  (1038)
1 site
A T C G A T T A G C T A
* Blocked by Dam methylation.
ClaI  (1038)
1 site
A T C G A T T A G C T A
* Blocked by Dam methylation.
BssHII  (1087)
1 site
G C G C G C C G C G C G

BssHII is typically used at 50°C, but is 75% active at 37°C.
BsgI  (1110)
1 site
G T G C A G ( N ) 14 N N C A C G T C ( N ) 14

Efficient cleavage requires at least two copies of the BsgI recognition sequence.
Sticky ends from different BsgI sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
MscI  (1180)
1 site
T G G C C A A C C G G T
HpaI  (1297)
1 site
G T T A A C C A A T T G
PaqCI  (1322)
1 site
C A C C T G C ( N ) 4 G T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the PaqCI recognition sequence.
Sticky ends from different PaqCI sites may not be compatible.
Cleavage can be improved with PaqCI Activator.
BsmBI  (1364)
1 site
C G T C T C N G C A G A G N ( N ) 4

Sticky ends from different BsmBI sites may not be compatible.
BsmBI-v2 is an improved version of BsmBI.
Esp3I  (1364)
1 site
C G T C T C N G C A G A G N ( N ) 4

Sticky ends from different Esp3I sites may not be compatible.
NsiI  (2137)
1 site
A T G C A T T A C G T A
BsmI  (2381)
1 site
G A A T G C N C T T A C G N

Sticky ends from different BsmI sites may not be compatible.
TcR
100 .. 1476  =  1377 bp
458 amino acids  =  50.1 kDa
Product: tetracycline efflux protein
confers resistance to tetracycline
TcR
100 .. 1476  =  1377 bp
458 amino acids  =  50.1 kDa
Product: tetracycline efflux protein
confers resistance to tetracycline
repB
1683 .. 2687  =  1005 bp
334 amino acids  =  39.8 kDa
Product: RepB replication protein
from Enterococcus faecalis plasmid pAMα1
repB
1683 .. 2687  =  1005 bp
334 amino acids  =  39.8 kDa
Product: RepB replication protein
from Enterococcus faecalis plasmid pAMα1
AmpR
3289 .. 4149  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
   Segment 1:  signal sequence  
   3289 .. 3357  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
3289 .. 4149  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
   Segment 2:  
   3358 .. 4149  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
3289 .. 4149  =  861 bp
286 amino acids  =  31.5 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
p15A ori
4314 .. 4858  =  545 bp
Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.
p15A ori
4314 .. 4858  =  545 bp
Plasmids containing the medium-copy-number p15A origin of replication can be propagated in E. coli cells that contain a second plasmid with the ColE1 origin.
AmpR promoter
3184 .. 3288  =  105 bp
AmpR promoter
3184 .. 3288  =  105 bp
MCS
1 .. 42  =  42 bp
multiple cloning site
MCS
1 .. 42  =  42 bp
multiple cloning site
ORF:  3289 .. 4149  =  861 bp
ORF:  286 amino acids  =  31.5 kDa
ORF:  248 .. 547  =  300 bp
ORF:  99 amino acids  =  10.9 kDa
ORF:  100 .. 1386  =  1287 bp
ORF:  428 amino acids  =  46.5 kDa
ORF:  1683 .. 2687  =  1005 bp
ORF:  334 amino acids  =  39.8 kDa
ORF:  3753 .. 4019  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
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