pECFP-C1

Vector for fusing ECFP to the N-terminus of a partner protein

Sequence Author: Clontech (TaKaRa)

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HomePlasmidsFluorescent Protein Genes & PlasmidspECFP-C1
AflIII - PciI (4673) ApaLI (4359) EcoO109I (3853) BsaI (3744) RsrII (3271) BsrDI (2988) PflFI - Tth111I (2873) FspI (2857) MscI (2837) PluTI (2758) SfoI (2756) NarI (2755) KasI (2754) EagI (2661) BspDI * - ClaI * (2595) StuI (2576) SfiI (2530) AseI (7) NdeI (234) SnaBI (340) NheI (591) BmtI (595) AfeI (596) AgeI (600) BsrGI (1322) BspEI (1330) BglII (1339) PaeR7I - XhoI (1343) Eco53kI (1348) SacI (1350) HindIII (1352) EcoRI (1359) PstI (1368) SalI (1369) AccI (1370) Acc65I (1375) KpnI (1379) SacII (1382) PspOMI (1383) TspMI - XmaI (1386) ApaI (1387) SmaI (1388) BamHI (1390) XbaI * (1402) stop codons BclI * (1412) MfeI (1505) HpaI (1518) AflII (1637) DraIII (1871) CsiI - SexAI * (2344) pECFP-C1 4731 bp
AflIII  (4673)
1 site		 A C R Y G T T G Y R C A
Sticky ends from different AflIII sites may not be compatible.
PciI  (4673)
1 site		 A C A T G T T G T A C A
PciI is inhibited by nonionic detergents.
ApaLI  (4359)
1 site		 G T G C A C C A C G T G
EcoO109I  (3853)
1 site		 R G G N C C Y Y C C N G G R
Sticky ends from different EcoO109I sites may not be compatible.
BsaI  (3744)
1 site		 G G T C T C N C C A G A G N ( N ) 4
Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
RsrII  (3271)
1 site		 C G G W C C G G C C W G G C
Efficient cleavage requires at least two copies of the RsrII recognition sequence.
Sticky ends from different RsrII sites may not be compatible.
For full activity, add fresh DTT.
BsrDI  (2988)
1 site		 G C A A T G N N C G T T A C
Sticky ends from different BsrDI sites may not be compatible.
PflFI  (2873)
1 site		 G A C N N N G T C C T G N N N C A G
The 1-base overhangs produced by PflFI may be hard to ligate.
Sticky ends from different PflFI sites may not be compatible.
Tth111I  (2873)
1 site		 G A C N N N G T C C T G N N N C A G
The 1-base overhangs produced by Tth111I may be hard to ligate.
Sticky ends from different Tth111I sites may not be compatible.
FspI  (2857)
1 site		 T G C G C A A C G C G T
MscI  (2837)
1 site		 T G G C C A A C C G G T
PluTI  (2758)
1 site		 G G C G C C C C G C G G
Efficient cleavage requires at least two copies of the PluTI recognition sequence.
SfoI  (2756)
1 site		 G G C G C C C C G C G G
NarI  (2755)
1 site		 G G C G C C C C G C G G
Efficient cleavage requires at least two copies of the NarI recognition sequence.
KasI  (2754)
1 site		 G G C G C C C C G C G G
EagI  (2661)
1 site		 C G G C C G G C C G G C
BspDI  (2595)
1 site		 A T C G A T T A G C T A
* Blocked by Dam methylation.
ClaI  (2595)
1 site		 A T C G A T T A G C T A
* Blocked by Dam methylation.
StuI  (2576)
1 site		 A G G C C T T C C G G A
SfiI  (2530)
1 site		 G G C C N N N N N G G C C C C G G N N N N N C C G G
Efficient cleavage requires at least two copies of the SfiI recognition sequence.
Sticky ends from different SfiI sites may not be compatible.
AseI  (7)
1 site		 A T T A A T T A A T T A
NdeI  (234)
1 site		 C A T A T G G T A T A C
Prolonged incubation with NdeI may lead to removal of additional nucleotides.
SnaBI  (340)
1 site		 T A C G T A A T G C A T
NheI  (591)
1 site		 G C T A G C C G A T C G
BmtI  (595)
1 site		 G C T A G C C G A T C G
AfeI  (596)
1 site		 A G C G C T T C G C G A
AgeI  (600)
1 site		 A C C G G T T G G C C A
BsrGI  (1322)
1 site		 T G T A C A A C A T G T
BsrGI is typically used at 37°C, but is even more active at 60°C.
BspEI  (1330)
1 site		 T C C G G A A G G C C T
BglII  (1339)
1 site		 A G A T C T T C T A G A
PaeR7I  (1343)
1 site		 C T C G A G G A G C T C
PaeR7I does not recognize the sequence CTCTCGAG.
XhoI  (1343)
1 site		 C T C G A G G A G C T C
Eco53kI  (1348)
1 site		 G A G C T C C T C G A G
SacI  (1350)
1 site		 G A G C T C C T C G A G
HindIII  (1352)
1 site		 A A G C T T T T C G A A
EcoRI  (1359)
1 site		 G A A T T C C T T A A G
PstI  (1368)
1 site		 C T G C A G G A C G T C
SalI  (1369)
1 site		 G T C G A C C A G C T G
AccI  (1370)
1 site		 G T M K A C C A K M T G
Efficient cleavage with AccI requires ≥13 bp on each side of the recognition sequence.
Sticky ends from different AccI sites may not be compatible.
Acc65I  (1375)
1 site		 G G T A C C C C A T G G
KpnI  (1379)
1 site		 G G T A C C C C A T G G
SacII  (1382)
1 site		 C C G C G G G G C G C C
Efficient cleavage requires at least two copies of the SacII recognition sequence.
PspOMI  (1383)
1 site		 G G G C C C C C C G G G
TspMI  (1386)
1 site		 C C C G G G G G G C C C
XmaI  (1386)
1 site		 C C C G G G G G G C C C
Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
ApaI  (1387)
1 site		 G G G C C C C C C G G G
ApaI can be used between 25°C and 37°C.
SmaI  (1388)
1 site		 C C C G G G G G G C C C
SmaI can be used at 37°C for brief incubations.
BamHI  (1390)
1 site		 G G A T C C C C T A G G
After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
XbaI  (1402)
1 site		 T C T A G A A G A T C T
* Blocked by Dam methylation.
BclI  (1412)
1 site		 T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
MfeI  (1505)
1 site		 C A A T T G G T T A A C
HpaI  (1518)
1 site		 G T T A A C C A A T T G
AflII  (1637)
1 site		 C T T A A G G A A T T C
DraIII  (1871)
1 site		 C A C N N N G T G G T G N N N C A C
Sticky ends from different DraIII sites may not be compatible.
CsiI  (2344)
1 site		 A C C W G G T T G G W C C A
Sticky ends from different CsiI sites may not be compatible.
SexAI  (2344)
1 site		 A C C W G G T T G G W C C A
* Blocked by Dcm methylation.
Sticky ends from different SexAI sites may not be compatible.
NeoR/KanR
2627 .. 3421  =  795 bp
264 amino acids  =  29.0 kDa
Product: aminoglycoside phosphotransferase from Tn5
confers resistance to neomycin, kanamycin, and G418 (Geneticin)
NeoR/KanR
2627 .. 3421  =  795 bp
264 amino acids  =  29.0 kDa
Product: aminoglycoside phosphotransferase from Tn5
confers resistance to neomycin, kanamycin, and G418 (Geneticin)
ECFP
613 .. 1329  =  717 bp
239 amino acids  =  26.9 kDa
3 segments
   Segment 1:  
   613 .. 615  =  3 bp
   1 amino acid  =  149.2 Da
Product: enhanced CFP
mammalian codon-optimized
ECFP
613 .. 1329  =  717 bp
239 amino acids  =  26.9 kDa
3 segments
   Segment 2:  1a  
   616 .. 618  =  3 bp
   1 amino acid  =  117.1 Da
Product: enhanced CFP
mammalian codon-optimized
ECFP
613 .. 1329  =  717 bp
239 amino acids  =  26.9 kDa
3 segments
   Segment 3:  
   619 .. 1329  =  711 bp
   237 amino acids  =  26.7 kDa
Product: enhanced CFP
mammalian codon-optimized
ECFP
613 .. 1329  =  717 bp
239 amino acids  =  26.9 kDa
3 segments
Product: enhanced CFP
mammalian codon-optimized
ori
4029 .. 4617  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
4029 .. 4617  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
f1 ori
1647 .. 2102  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
1647 .. 2102  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
SV40 promoter
2235 .. 2592  =  358 bp
SV40 enhancer and early promoter
SV40 promoter
2235 .. 2592  =  358 bp
SV40 enhancer and early promoter
CMV enhancer
61 .. 364  =  304 bp
human cytomegalovirus immediate early enhancer
CMV enhancer
61 .. 364  =  304 bp
human cytomegalovirus immediate early enhancer
CMV promoter
365 .. 568  =  204 bp
human cytomegalovirus (CMV) immediate early promoter
CMV promoter
365 .. 568  =  204 bp
human cytomegalovirus (CMV) immediate early promoter
SV40 poly(A) signal
1519 .. 1640  =  122 bp
SV40 polyadenylation signal
SV40 poly(A) signal
1519 .. 1640  =  122 bp
SV40 polyadenylation signal
AmpR promoter
2129 .. 2233  =  105 bp
AmpR promoter
2129 .. 2233  =  105 bp
MCS
1330 .. 1395  =  66 bp
multiple cloning site of fluorescent protein plasmids
MCS
1330 .. 1395  =  66 bp
multiple cloning site of fluorescent protein plasmids
HSV TK poly(A) signal
3653 .. 3700  =  48 bp
herpesvirus thymidine kinase polyadenylation signal
HSV TK poly(A) signal
3653 .. 3700  =  48 bp
herpesvirus thymidine kinase polyadenylation signal
stop codons
1404 .. 1414  =  11 bp
stop codons in all three reading frames
stop codons
1404 .. 1414  =  11 bp
stop codons in all three reading frames
SV40 ori
2443 .. 2578  =  136 bp
SV40 origin of replication
SV40 ori
2443 .. 2578  =  136 bp
SV40 origin of replication
ORF:  613 .. 1410  =  798 bp
ORF:  265 amino acids  =  29.3 kDa
ORF:  3442 .. 3891  =  450 bp
ORF:  149 amino acids  =  16.3 kDa
ORF:  2627 .. 3421  =  795 bp
ORF:  264 amino acids  =  29.0 kDa
ORF:  2799 .. 3185  =  387 bp
ORF:  128 amino acids  =  14.6 kDa
ORF:  598 .. 1428  =  831 bp
ORF:  276 amino acids  =  27.7 kDa
ORF:  2936 .. 3472  =  537 bp
ORF:  178 amino acids  =  19.8 kDa
ORF:  3647 .. 3880  =  234 bp
ORF:  77 amino acids  =  8.6 kDa
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