pGL2-Control

Control vector with the SV40 enhancer and promoter driving strong luciferase expression.

Sequence Author: Promega

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GLprimer1 (6014 .. 6036) DraIII (5489) XmnI (4936) ScaI (4817) EaeI (4725) BsaI (4398) AhdI (4337) AlwNI (3860) PciI (3444) AfeI (3320) RVprimer4 (3245 .. 3264) PshAI (3259) AccI (3195) SalI (3194) BamHI (3188) CsiI - SexAI * (3079) TspMI - XmaI (1) SmaI (3) Acc65I (8) KpnI (12) Eco53kI (16) SacI (18) MluI (22) NheI (28) BmtI (32) PaeR7I - XhoI (33) BglII (37) SfiI (176) StuI (222) AvrII (223) HindIII (239) GLprimer2 (269 .. 291) KasI (300) NarI (301) SfoI (302) PluTI (304) XbaI (315) PfoI * (375) BsiWI (422) BsrGI (758) EcoRI (855) BstEII (875) Bsu36I (881) XcmI (1003) EcoO109I - PpuMI (1447) PacI (1592) EcoRV (1606) BspDI - ClaI (1633) BfuAI - BspMI (1666) SgrAI (1696) EcoNI (1885) PflMI (2236) BsgI (2468) pGL2-Control 6047 bp
DraIII  (5489)
1 site
C A C N N N G T G G T G N N N C A C

Sticky ends from different DraIII sites may not be compatible.
XmnI  (4936)
1 site
G A A N N N N T T C C T T N N N N A A G
ScaI  (4817)
1 site
A G T A C T T C A T G A
EaeI  (4725)
1 site
Y G G C C R R C C G G Y
BsaI  (4398)
1 site
G G T C T C N C C A G A G N ( N ) 4

Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
AhdI  (4337)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
AlwNI  (3860)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
PciI  (3444)
1 site
A C A T G T T G T A C A

PciI is inhibited by nonionic detergents.
AfeI  (3320)
1 site
A G C G C T T C G C G A
PshAI  (3259)
1 site
G A C N N N N G T C C T G N N N N C A G

PshAI quickly loses activity at 37°C, but can be used at 25°C for long incubations.
AccI  (3195)
1 site
G T M K A C C A K M T G

Efficient cleavage with AccI requires ≥13 bp on each side of the recognition sequence.
Sticky ends from different AccI sites may not be compatible.
SalI  (3194)
1 site
G T C G A C C A G C T G
BamHI  (3188)
1 site
G G A T C C C C T A G G

After cleavage, BamHI-HF® (but not the original BamHI) can remain bound to DNA and alter its electrophoretic mobility.
CsiI  (3079)
1 site
A C C W G G T T G G W C C A

Sticky ends from different CsiI sites may not be compatible.
SexAI  (3079)
1 site
A C C W G G T T G G W C C A
* Blocked by Dcm methylation.
Sticky ends from different SexAI sites may not be compatible.
TspMI  (1)
1 site
C C C G G G G G G C C C
XmaI  (1)
1 site
C C C G G G G G G C C C

Cleavage may be enhanced when more than one copy of the XmaI recognition sequence is present.
SmaI  (3)
1 site
C C C G G G G G G C C C

SmaI can be used at 37°C for brief incubations.
Acc65I  (8)
1 site
G G T A C C C C A T G G
KpnI  (12)
1 site
G G T A C C C C A T G G
Eco53kI  (16)
1 site
G A G C T C C T C G A G
SacI  (18)
1 site
G A G C T C C T C G A G
MluI  (22)
1 site
A C G C G T T G C G C A
NheI  (28)
1 site
G C T A G C C G A T C G
BmtI  (32)
1 site
G C T A G C C G A T C G
PaeR7I  (33)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
XhoI  (33)
1 site
C T C G A G G A G C T C
BglII  (37)
1 site
A G A T C T T C T A G A
SfiI  (176)
1 site
G G C C N N N N N G G C C C C G G N N N N N C C G G

Efficient cleavage requires at least two copies of the SfiI recognition sequence.
Sticky ends from different SfiI sites may not be compatible.
StuI  (222)
1 site
A G G C C T T C C G G A
AvrII  (223)
1 site
C C T A G G G G A T C C
HindIII  (239)
1 site
A A G C T T T T C G A A
KasI  (300)
1 site
G G C G C C C C G C G G
NarI  (301)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the NarI recognition sequence.
SfoI  (302)
1 site
G G C G C C C C G C G G
PluTI  (304)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the PluTI recognition sequence.
XbaI  (315)
1 site
T C T A G A A G A T C T
PfoI  (375)
1 site
T C C N G G A A G G N C C T
* Blocked by Dcm methylation.
Sticky ends from different PfoI sites may not be compatible.
BsiWI  (422)
1 site
C G T A C G G C A T G C

BsiWI is typically used at 55°C, but is 50% active at 37°C.
BsrGI  (758)
1 site
T G T A C A A C A T G T

BsrGI is typically used at 37°C, but is even more active at 60°C.
EcoRI  (855)
1 site
G A A T T C C T T A A G
BstEII  (875)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
Bsu36I  (881)
1 site
C C T N A G G G G A N T C C

Sticky ends from different Bsu36I sites may not be compatible.
XcmI  (1003)
1 site
C C A N N N N N N N N N T G G G G T N N N N N N N N N A C C

The 1-base overhangs produced by XcmI may be hard to ligate.
Sticky ends from different XcmI sites may not be compatible.
EcoO109I  (1447)
1 site
R G G N C C Y Y C C N G G R

Sticky ends from different EcoO109I sites may not be compatible.
PpuMI  (1447)
1 site
R G G W C C Y Y C C W G G R

Sticky ends from different PpuMI sites may not be compatible.
PacI  (1592)
1 site
T T A A T T A A A A T T A A T T
EcoRV  (1606)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
BspDI  (1633)
1 site
A T C G A T T A G C T A
ClaI  (1633)
1 site
A T C G A T T A G C T A
BfuAI  (1666)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BfuAI recognition sequence.
Sticky ends from different BfuAI sites may not be compatible.
BfuAI is typically used at 50°C, but is 50% active at 37°C.
BspMI  (1666)
1 site
A C C T G C ( N ) 4 T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the BspMI recognition sequence.
Sticky ends from different BspMI sites may not be compatible.
SgrAI  (1696)
1 site
C R C C G G Y G G Y G G C C R C

Efficient cleavage requires at least two copies of the SgrAI recognition sequence.
EcoNI  (1885)
1 site
C C T N N N N N A G G G G A N N N N N T C C

The 1-base overhangs produced by EcoNI may be hard to ligate.
Sticky ends from different EcoNI sites may not be compatible.
PflMI  (2236)
1 site
C C A N N N N N T G G G G T N N N N N A C C

Sticky ends from different PflMI sites may not be compatible.
BsgI  (2468)
1 site
G T G C A G ( N ) 14 N N C A C G T C ( N ) 14

Efficient cleavage requires at least two copies of the BsgI recognition sequence.
Sticky ends from different BsgI sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
GLprimer1
23-mer  /  35% GC
1 binding site
6014 .. 6036  =  23 annealed bases
Tm  =  51°C
RVprimer4
20-mer  /  65% GC
1 binding site
3245 .. 3264  =  20 annealed bases
Tm  =  62°C
GLprimer2
23-mer  /  39% GC
1 binding site
269 .. 291  =  23 annealed bases
Tm  =  57°C
luciferase
268 .. 1920  =  1653 bp
550 amino acids  =  60.7 kDa
Product: firefly luciferase
luciferase
268 .. 1920  =  1653 bp
550 amino acids  =  60.7 kDa
Product: firefly luciferase
AmpR
4264 .. 5124  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 2:  
   4264 .. 5055  =  792 bp
   263 amino acids  =  28.9 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4264 .. 5124  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
   Segment 1:  signal sequence  
   5056 .. 5124  =  69 bp
   23 amino acids  =  2.6 kDa
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
AmpR
4264 .. 5124  =  861 bp
286 amino acids  =  31.6 kDa
2 segments
Product: β-lactamase
confers resistance to ampicillin, carbenicillin, and related antibiotics
ori
3505 .. 4093  =  589 bp
high-copy-number colE1/pMB1/pBR322/pUC origin of replication
ori
3505 .. 4093  =  589 bp
high-copy-number colE1/pMB1/pBR322/pUC origin of replication
f1 ori
5256 .. 5711  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
f1 ori
5256 .. 5711  =  456 bp
f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis
SV40 enhancer
2947 .. 3176  =  230 bp
SV40 enhancer
2947 .. 3176  =  230 bp
SV40 promoter
42 .. 238  =  197 bp
SV40 early promoter
SV40 promoter
42 .. 238  =  197 bp
SV40 early promoter
SV40 poly(A) signal
2801 .. 2935  =  135 bp
SV40 polyadenylation signal
SV40 poly(A) signal
2801 .. 2935  =  135 bp
SV40 polyadenylation signal
SV40 poly(A) signal
5901 .. 6022  =  122 bp
SV40 polyadenylation signal
SV40 poly(A) signal
5901 .. 6022  =  122 bp
SV40 polyadenylation signal
AmpR promoter
5125 .. 5229  =  105 bp
AmpR promoter
5125 .. 5229  =  105 bp
small t intron
2161 .. 2226  =  66 bp
simian virus 40 (SV40) small t antigen intron
small t intron
2161 .. 2226  =  66 bp
simian virus 40 (SV40) small t antigen intron
MCS
1 .. 42  =  42 bp
multiple cloning site
MCS
1 .. 42  =  42 bp
multiple cloning site
ORF:  268 .. 1920  =  1653 bp
ORF:  550 amino acids  =  60.7 kDa
ORF:  2305 .. 2778  =  474 bp
ORF:  157 amino acids  =  18.2 kDa
ORF:  4394 .. 4660  =  267 bp
ORF:  88 amino acids  =  9.2 kDa
ORF:  2784 .. 3023  =  240 bp
ORF:  79 amino acids  =  8.5 kDa
ORF:  2910 .. 3293  =  384 bp
ORF:  127 amino acids  =  14.3 kDa
ORF:  4264 .. 5124  =  861 bp
ORF:  286 amino acids  =  31.6 kDa
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