pEarleyGate 202

Gateway®-compatible plant transformation vector with an N-terminal FLAG tag.

Sequence Author: Pikaard Lab

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LB T-DNA repeat BclI * (11,539) PsiI (11,408) BspHI (11,082) EcoRV (10,659) PluTI (9400) SfoI (9398) NarI (9397) KasI (9396) EcoNI (8924) BmtI (8615) NheI (8611) BsiWI (8495) PmeI (5483) AseI (92) Acc65I (407) KpnI (411) FspAI (521) PaqCI (585) AfeI (758) BstBI (1770) StuI (1868) PshAI (2467) PaeR7I - PspXI - XhoI (2654) TMV Ω ATG FLAG attR1 lac UV5 promoter BspEI (3209) BbvCI (3938) SrfI (4084) BstXI (4201) AvrII (4473) PacI (4519) SpeI (4531) MfeI (4835) BstEII (5107) AhdI (5237) SbfI (5262) HindIII (5270) PvuI (5396) pEarleyGate 202 11,776 bp
BclI  (11,539)
1 site
T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
PsiI  (11,408)
1 site
T T A T A A A A T A T T
BspHI  (11,082)
1 site
T C A T G A A G T A C T
EcoRV  (10,659)
1 site
G A T A T C C T A T A G

EcoRV is reportedly more prone than its isoschizomer Eco32I to delete a base after cleavage.
PluTI  (9400)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the PluTI recognition sequence.
SfoI  (9398)
1 site
G G C G C C C C G C G G
NarI  (9397)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the NarI recognition sequence.
KasI  (9396)
1 site
G G C G C C C C G C G G
EcoNI  (8924)
1 site
C C T N N N N N A G G G G A N N N N N T C C

The 1-base overhangs produced by EcoNI may be hard to ligate.
Sticky ends from different EcoNI sites may not be compatible.
BmtI  (8615)
1 site
G C T A G C C G A T C G
NheI  (8611)
1 site
G C T A G C C G A T C G
BsiWI  (8495)
1 site
C G T A C G G C A T G C

BsiWI is typically used at 55°C, but is 50% active at 37°C.
PmeI  (5483)
1 site
G T T T A A A C C A A A T T T G
AseI  (92)
1 site
A T T A A T T A A T T A
Acc65I  (407)
1 site
G G T A C C C C A T G G
KpnI  (411)
1 site
G G T A C C C C A T G G
FspAI  (521)
1 site
R T G C G C A Y Y A C G C G T R
PaqCI  (585)
1 site
C A C C T G C ( N ) 4 G T G G A C G ( N ) 4 ( N ) 4

Efficient cleavage requires at least two copies of the PaqCI recognition sequence.
Sticky ends from different PaqCI sites may not be compatible.
Cleavage can be improved with PaqCI Activator.
AfeI  (758)
1 site
A G C G C T T C G C G A
BstBI  (1770)
1 site
T T C G A A A A G C T T
StuI  (1868)
1 site
A G G C C T T C C G G A
PshAI  (2467)
1 site
G A C N N N N G T C C T G N N N N C A G

PshAI quickly loses activity at 37°C, but can be used at 25°C for long incubations.
PaeR7I  (2654)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (2654)
1 site
V C T C G A G B B G A G C T C V
XhoI  (2654)
1 site
C T C G A G G A G C T C
BspEI  (3209)
1 site
T C C G G A A G G C C T
BbvCI  (3938)
1 site
C C T C A G C G G A G T C G
SrfI  (4084)
1 site
G C C C G G G C C G G G C C C G
BstXI  (4201)
1 site
C C A N N N N N N T G G G G T N N N N N N A C C

Sticky ends from different BstXI sites may not be compatible.
AvrII  (4473)
1 site
C C T A G G G G A T C C
PacI  (4519)
1 site
T T A A T T A A A A T T A A T T
SpeI  (4531)
1 site
A C T A G T T G A T C A
MfeI  (4835)
1 site
C A A T T G G T T A A C
BstEII  (5107)
1 site
G G T N A C C C C A N T G G

Sticky ends from different BstEII sites may not be compatible.
BstEII is typically used at 60°C, but is 50% active at 37°C.
AhdI  (5237)
1 site
G A C N N N N N G T C C T G N N N N N C A G

The 1-base overhangs produced by AhdI may be hard to ligate.
Sticky ends from different AhdI sites may not be compatible.
SbfI  (5262)
1 site
C C T G C A G G G G A C G T C C
HindIII  (5270)
1 site
A A G C T T T T C G A A
PvuI  (5396)
1 site
C G A T C G G C T A G C
pVS1 RepA
7880 .. 8953  =  1074 bp
357 amino acids  =  39.9 kDa
Product: replication protein from Pseudomonas plasmid pVS1
pVS1 RepA
7880 .. 8953  =  1074 bp
357 amino acids  =  39.9 kDa
Product: replication protein from Pseudomonas plasmid pVS1
KanR
10,558 .. 11,352  =  795 bp
264 amino acids  =  31.0 kDa
Product: aminoglycoside phosphotransferase
confers resistance to kanamycin
KanR
10,558 .. 11,352  =  795 bp
264 amino acids  =  31.0 kDa
Product: aminoglycoside phosphotransferase
confers resistance to kanamycin
OCS terminator
4547 .. 5254  =  708 bp
octopine synthase terminator
OCS terminator
4547 .. 5254  =  708 bp
octopine synthase terminator
CmR
3000 .. 3659  =  660 bp
219 amino acids  =  25.7 kDa
Product: chloramphenicol acetyltransferase
confers resistance to chloramphenicol
CmR
3000 .. 3659  =  660 bp
219 amino acids  =  25.7 kDa
Product: chloramphenicol acetyltransferase
confers resistance to chloramphenicol
pVS1 StaA
6822 .. 7451  =  630 bp
209 amino acids  =  22.1 kDa
Product: stability protein from Pseudomonas plasmid pVS1
pVS1 StaA
6822 .. 7451  =  630 bp
209 amino acids  =  22.1 kDa
Product: stability protein from Pseudomonas plasmid pVS1
ori
9883 .. 10,471  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
ori
9883 .. 10,471  =  589 bp
high-copy-number ColE1/pMB1/pBR322/pUC origin of replication
BlpR
373 .. 924  =  552 bp
183 amino acids  =  20.6 kDa
Product: phosphinothricin acetyltransferase
confers resistance to bialophos or phosphinothricin
BlpR
373 .. 924  =  552 bp
183 amino acids  =  20.6 kDa
Product: phosphinothricin acetyltransferase
confers resistance to bialophos or phosphinothricin
MAS promoter
930 .. 1310  =  381 bp
mannopine synthase promoter (Velten et al., 1984)
MAS promoter
930 .. 1310  =  381 bp
mannopine synthase promoter (Velten et al., 1984)
CaMV 35S promoter
2306 .. 2651  =  346 bp
strong constitutive promoter from cauliflower mosaic virus
CaMV 35S promoter
2306 .. 2651  =  346 bp
strong constitutive promoter from cauliflower mosaic virus
ccdB
4001 .. 4306  =  306 bp
101 amino acids  =  11.7 kDa
Product: CcdB, a bacterial toxin that poisons DNA gyrase
Plasmids containing the ccdB gene cannot be propagated in standard E. coli strains.
ccdB
4001 .. 4306  =  306 bp
101 amino acids  =  11.7 kDa
Product: CcdB, a bacterial toxin that poisons DNA gyrase
Plasmids containing the ccdB gene canno