pTRE3G-ZsGreen1

Vector for doxycycline-inducible expression of a gene together with the ZsGreen fluorescent protein.

Sequence Author: Clontech (TaKaRa)

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EcoRI (4695) AatII (4624) ZraI (4622) ScaI (4182) TatI (4180) PvuI (4072) FspI (3924) NmeAIII (3850) BsaI (3763) AlwNI (3225) PspFI (3117) BseYI (3113) DrdI (2917) BspQI - SapI (2693) HpaI (2491) MfeI (2478) AvaI - BsoBI - PaeR7I - PspXI - XhoI (1) KasI (274) NarI (275) SfoI (276) PluTI (278) Eco53kI (292) SacI (294) SalI (383) AccI (384) BclI * (471) PvuII (575) Bpu10I (855) EcoNI (899) BspEI * (1064) EagI (1085) NgoMIV (1087) NaeI (1089) FseI (1091) PspOMI (1206) ApaI (1210) AvrII (1244) BsaAI - PmlI (1409) BfuAI - BspMI - PaqCI (1432) DraIII (1456) Acc65I (1534) KpnI (1538) BtgI (1627) BmgBI (1636) MscI (1671) MluI (1692) NheI (1704) BmtI (1708) PstI - SbfI (1714) BamHI (1716) BsgI (2159) BsaBI * (2390) pTRE3G-ZsGreen1 4700 bp
EcoRI  (4695)
1 site
G A A T T C C T T A A G
AatII  (4624)
1 site
G A C G T C C T G C A G
ZraI  (4622)
1 site
G A C G T C C T G C A G
ScaI  (4182)
1 site
A G T A C T T C A T G A
TatI  (4180)
1 site
W G T A C W W C A T G W
PvuI  (4072)
1 site
C G A T C G G C T A G C
FspI  (3924)
1 site
T G C G C A A C G C G T
NmeAIII  (3850)
1 site
G C C G A G ( N ) 18-19 N N C G G C T C ( N ) 18-19

Efficient cleavage requires at least two copies of the NmeAIII recognition sequence.
Sticky ends from different NmeAIII sites may not be compatible.
For full activity, add fresh S-adenosylmethionine (SAM).
BsaI  (3763)
1 site
G G T C T C N C C A G A G N ( N ) 4

Sticky ends from different BsaI sites may not be compatible.
BsaI can be used between 37°C and 50°C.
AlwNI  (3225)
1 site
C A G N N N C T G G T C N N N G A C

Sticky ends from different AlwNI sites may not be compatible.
PspFI  (3117)
1 site
C C C A G C G G G T C G
BseYI  (3113)
1 site
C C C A G C G G G T C G

After cleavage, BseYI can remain bound to DNA and alter its electrophoretic mobility.
DrdI  (2917)
1 site
G A C N N N N N N G T C C T G N N N N N N C A G

Sticky ends from different DrdI sites may not be compatible.
BspQI  (2693)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different BspQI sites may not be compatible.
SapI  (2693)
1 site
G C T C T T C N C G A G A A G N N N N

Sticky ends from different SapI sites may not be compatible.
SapI gradually settles in solution, so a tube of SapI should be mixed before removing an aliquot.
HpaI  (2491)
1 site
G T T A A C C A A T T G
MfeI  (2478)
1 site
C A A T T G G T T A A C
AvaI  (1)
1 site
C Y C G R G G R G C Y C

Sticky ends from different AvaI sites may not be compatible.
BsoBI  (1)
1 site
C Y C G R G G R G C Y C

Sticky ends from different BsoBI sites may not be compatible.
BsoBI is typically used at 37°C, but can be used at temperatures up to 65°C.
PaeR7I  (1)
1 site
C T C G A G G A G C T C

PaeR7I does not recognize the sequence CTCTCGAG.
PspXI  (1)
1 site
V C T C G A G B B G A G C T C V
XhoI  (1)
1 site
C T C G A G G A G C T C
KasI  (274)
1 site
G G C G C C C C G C G G
NarI  (275)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the NarI recognition sequence.
SfoI  (276)
1 site
G G C G C C C C G C G G
PluTI  (278)
1 site
G G C G C C C C G C G G

Efficient cleavage requires at least two copies of the PluTI recognition sequence.
Eco53kI  (292)
1 site
G A G C T C C T C G A G
SacI  (294)
1 site
G A G C T C C T C G A G
SalI  (383)
1 site
G T C G A C C A G C T G
AccI  (384)
1 site
G T M K A C C A K M T G

Efficient cleavage with AccI requires ≥13 bp on each side of the recognition sequence.
Sticky ends from different AccI sites may not be compatible.
BclI  (471)
1 site
T G A T C A A C T A G T
* Blocked by Dam methylation.
BclI is typically used at 50-55°C, but is 50% active at 37°C.
PvuII  (575)
1 site
C A G C T G G T C G A C
Bpu10I  (855)
1 site
C C T N A G C G G A N T C G

Cleavage may be enhanced when more than one copy of the Bpu10I recognition sequence is present.
This recognition sequence is asymmetric, so ligating sticky ends generated by Bpu10I will not always regenerate a Bpu10I site.
Sticky ends from different Bpu10I sites may not be compatible.
EcoNI  (899)
1 site
C C T N N N N N A G G G G A N N N N N T C C

The 1-base overhangs produced by EcoNI may be hard to ligate.
Sticky ends from different EcoNI sites may not be compatible.
BspEI  (1064)
1 site
T C C G G A A G G C C T
* Blocked by Dam methylation.
EagI  (1085)
1 site
C G G C C G G C C G G C
NgoMIV  (1087)
1 site
G C